Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00254 and BPUM_0136
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:12
# Commandline: needle
# -asequence dna-align/BSNT_00254___rplM.1.24716.seq
# -bsequence dna-align/BPUM_0136___rplM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00254___rplM-BPUM_0136___rplM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00254___rplM-BPUM_0136___rplM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00254___rplM
# 2: BPUM_0136___rplM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 444
# Identity: 381/444 (85.8%)
# Similarity: 381/444 (85.8%)
# Gaps: 12/444 ( 2.7%)
# Score: 1647.5
#
#
#=======================================
BSNT_00254___ 1 ATGCGTACAACACCTATGGCTAACGCAAGTACTATTGAACGCAAGTGGTT 50
||||||||||||||.|||||.||||||||.||.|||||.|||||.|||.|
BPUM_0136___r 1 ATGCGTACAACACCAATGGCGAACGCAAGCACAATTGAGCGCAAATGGCT 50
BSNT_00254___ 51 AGTTGTTGATGCTGCTGGCAAGACTTTAGGTCGTCTTTCTTCAGAAGTTG 100
||||||||||||.||.|||||||||.||||||||||.|||.|.|||||.|
BPUM_0136___r 51 AGTTGTTGATGCGGCAGGCAAGACTCTAGGTCGTCTATCTACTGAAGTAG 100
BSNT_00254___ 101 CAGCTATC-CTT---CGCGGAAAACACAAACCAACTTACACACCACACGT 146
| ||| ||| |||||.||.||||||||||||||.|||||||||||
BPUM_0136___r 101 C----ATCACTTTTGCGCGGTAAGCACAAACCAACTTATACACCACACGT 146
BSNT_00254___ 147 TGATACTGGAGATCATGTGATCATCATCAACGCTGAAAAAATCGAGTTAA 196
||||||.||.||||||||.|||||||||||.|||||.||||||||.||||
BPUM_0136___r 147 TGATACAGGTGATCATGTAATCATCATCAATGCTGAGAAAATCGAATTAA 196
BSNT_00254___ 197 CTGGTAAAAAGTTAACTGACAAAATCTACTACCGTCACACTCAA--CATC 244
|.|||||.||.||.||.||||||||.||||||||||||| ||| ||.|
BPUM_0136___r 197 CAGGTAAGAAATTGACGGACAAAATTTACTACCGTCACA--CAATGCACC 244
BSNT_00254___ 245 CAGGCGGATTAAAATCAAGAACTGCTCTTGAAATGCGTACAAACTACCCT 294
||||.||.||.|||..|||||||||||||||.||||||||||||||||||
BPUM_0136___r 245 CAGGTGGTTTGAAACAAAGAACTGCTCTTGAGATGCGTACAAACTACCCT 294
BSNT_00254___ 295 GAGAAAATGCTTGAGCTTGCTATCAAAGGCATGCTTCCAAAAGGTTCTCT 344
||.||||||.|.|||||||||||||||||.|||||||||||.|||.|..|
BPUM_0136___r 295 GAAAAAATGTTGGAGCTTGCTATCAAAGGTATGCTTCCAAAGGGTCCATT 344
BSNT_00254___ 345 AGGTCGTCAAATGTTCAAAAAATTGAACGTATACCGTGGTTCTGAGCATC 394
|||.||||||||||||||||||||.||.||.|||||||||||||||||||
BPUM_0136___r 345 AGGCCGTCAAATGTTCAAAAAATTAAATGTGTACCGTGGTTCTGAGCATC 394
BSNT_00254___ 395 CACACGAAGCACAAAAACCTGAAGTTTACGAACTTCGCGGTTAA 438
||||..||||||||.|||||||||||||||||||||||||||||
BPUM_0136___r 395 CACATCAAGCACAACAACCTGAAGTTTACGAACTTCGCGGTTAA 438
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