Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00252 and BPUM_0134

See Amino acid alignment / Visit BSNT_00252 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:12
# Commandline: needle
#    -asequence dna-align/BSNT_00252___ybaF.1.24716.seq
#    -bsequence dna-align/BPUM_0134___ybaF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00252___ybaF-BPUM_0134___ybaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00252___ybaF-BPUM_0134___ybaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00252___ybaF
# 2: BPUM_0134___ybaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 821
# Identity:     581/821 (70.8%)
# Similarity:   581/821 (70.8%)
# Gaps:          46/821 ( 5.6%)
# Score: 1868.5
# 
#
#=======================================

BSNT_00252___      1 ATGATGGACAGCATGATTATCGGCAAGTATGTACCGGGGACTTCACTTGT     50
                     ||||||||.||.||||||||||||||.|||||.||.||.||.||..||||
BPUM_0134___y      1 ATGATGGATAGTATGATTATCGGCAAATATGTGCCAGGTACATCCTTTGT     50

BSNT_00252___     51 TCACCGGCTTGACCCCAGAACAAAACTG--ATCACGATCTTTTTATTTGT     98
                     .||.||.|||||.||.||.|||||.|||  ||||  ||.||.||.|||||
BPUM_0134___y     51 CCATCGTCTTGATCCAAGGACAAAGCTGTTATCA--ATTTTCTTTTTTGT     98

BSNT_00252___     99 CTGCATTGTATTCTTAGCCAATAATGTTCA-GACATACG--CGTTGCTTG    145
                     ||..|||||.||.||.||.|||||| |.|| .||.||||  |.||  |.|
BPUM_0134___y     99 CTTTATTGTCTTTTTTGCTAATAAT-TACATCACCTACGGACTTT--TAG    145

BSNT_00252___    146 GTTTATTTACAAT-----TGGCG-TCGTTTCTTTAACAAGAGTTCCTTTC    189
                     |..|.|||||..|     |||.| |.||.|||    ||  .||.||..|.
BPUM_0134___y    146 GGATCTTTACCCTTCTTGTGGTGATGGTGTCT----CA--GGTGCCGCTA    189

BSNT_00252___    190 T-CTTTTTTAATGAAAGGGCTGAAGCCAATCATCTGGATTGTCCTTTTTA    238
                     | ||||.|| .|.|||||..|||||||.|||.|.|||||||||||.||||
BPUM_0134___y    190 TACTTTATT-CTTAAAGGAATGAAGCCGATCCTATGGATTGTCCTGTTTA    238

BSNT_00252___    239 CGTTCCTTCTTCACATCCTTATGACACATGAAGGACCGATTATCTTTCAA    288
                     |.|||.||||.||.||..||||||||.|.||.||..|..|..|.|||||.
BPUM_0134___y    239 CCTTCATTCTGCATATTTTTATGACAAAGGATGGCGCCTTGCTATTTCAC    288

BSNT_00252___    289 ATAGGTTTTTTCAAAGTCTATGAGGGCGGTCTGGTTCAGGGGATATTCAT    338
                     .|.||||||||.||..|.|||||.|..|||||....||||||||.|||||
BPUM_0134___y    289 TTTGGTTTTTTAAATATTTATGAAGAAGGTCTAAAGCAGGGGATTTTCAT    338

BSNT_00252___    339 TTCTCTTAGATTCGTCTATTTGATTTTAATCACAACTTTATTAACGCTTA    388
                     |||.||..|.||.||||||.|.||..|.||.||.||..|..|.|||.|.|
BPUM_0134___y    339 TTCACTCCGTTTTGTCTATCTCATCATGATGACGACACTTCTGACGTTAA    388

BSNT_00252___    389 CGACCACACCGATTGAGATTACCGATGGAATGGAGCAGCTGCTGAACCCA    438
                     |.||.||.||.||.||..|.||.||.||.|||||..||.||||..|||||
BPUM_0134___y    389 CCACAACGCCTATAGAAGTGACAGACGGTATGGAAAAGTTGCTTCACCCA    438

BSNT_00252___    439 TT--GAAAAAATTAAAGCTTCCTGTTCATGAGCTGGCTCTTATGATGTCA    486
                     ||  |.||||  |.||.||.||.|||||||||||.|||||.||||||||.
BPUM_0134___y    439 TTCCGTAAAA--TCAAACTGCCCGTTCATGAGCTTGCTCTCATGATGTCC    486

BSNT_00252___    487 ATTTCTTTACGGTTTATTCCGACACTGA-TGGAGGAGACAGATAAGATCA    535
                     ||.|||.|.|||||||||||.|| ||.| |.||.||||||||.||.||||
BPUM_0134___y    487 ATCTCTCTTCGGTTTATTCCAAC-CTTACTAGAAGAGACAGACAAAATCA    535

BSNT_00252___    536 TGAAGGCTCAGATGGCGCGAGGCGTTGATTTTACAAGCGGGCCTGTCAAA    585
                     |||||||.||.|||||..||||.|||||||||||||||||.|||.|.|||
BPUM_0134___y    536 TGAAGGCACAAATGGCAAGAGGTGTTGATTTTACAAGCGGACCTCTTAAA    585

BSNT_00252___    586 GAAAGAGTGAAGGCTATTGTCCCGCTT-CTTGTCCCGCTCTTCGTCAGCG    634
                     ||..|..||||.||.||.||.|| ||| |||||||||||.||||||||.|
BPUM_0134___y    586 GATCGCATGAAAGCCATCGTTCC-CTTACTTGTCCCGCTTTTCGTCAGTG    634

BSNT_00252___    635 CATTTAAACGCGCCGAAGAGCTTGCGGTGGCAATGGAAGCAAGAGGCTAT    684
                     |.|||||.||.||.||.||.||.|||...||.||||||||.|||||||||
BPUM_0134___y    635 CGTTTAAGCGTGCAGAGGAACTAGCGACTGCTATGGAAGCGAGAGGCTAT    684

BSNT_00252___    685 CAAGGCGGAGAAGGACGTACGAAATATAGAAAGCTTGTAT-GGACAGGAA    733
                     |..||.|||||||||||.||||||||..|..|||||||.| ||.||.| |
BPUM_0134___y    685 CGCGGAGGAGAAGGACGGACGAAATACCGTCAGCTTGTCTGGGGCATG-A    733

BSNT_00252___    734 AAGACAC-TTCTGTCATTG-TCAGCTTAATTGTATTAGCTG----CTTTG    777
                     ||||||| |||  .||||| ||...||.||..|.|||.|.|    |.|||
BPUM_0134___y    734 AAGACACGTTC--ACATTGCTCCTGTTCATCCTGTTAACAGCACTCCTTG    781

BSNT_00252___    778 TTATTTTTCTTAAGGGCTTAG    798
                     |..||    .|.||...||||
BPUM_0134___y    782 TGCTT----CTGAGAAATTAG    798


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00252 and BPUM_0134

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
