Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00250 and BPUM_0132

See Amino acid alignment / Visit BSNT_00250 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:12
# Commandline: needle
#    -asequence dna-align/BSNT_00250___ybxA.1.24716.seq
#    -bsequence dna-align/BPUM_0132___cbiO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00250___ybxA-BPUM_0132___cbiO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00250___ybxA-BPUM_0132___cbiO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00250___ybxA
# 2: BPUM_0132___cbiO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 861
# Identity:     632/861 (73.4%)
# Similarity:   632/861 (73.4%)
# Gaps:          33/861 ( 3.8%)
# Score: 2226.5
# 
#
#=======================================

BSNT_00250___      1 AT---GAATCAAAATCAGTTGATATCGGTAGAGGATATCGTATTTCGATA     47
                     ||   |||  .|.||.|.||||    .|||.||||.||.||||||||.||
BPUM_0132___c      1 ATGGGGAA--GACATTAATTGA----CGTAAAGGACATTGTATTTCGTTA     44

BSNT_00250___     48 TCGGAAGGACGCAGA-AAGACGAGCACTAGACGGCGTCTCCCTGCAGGTG     96
                     ||..|||||.||.|| ||| |..||..||||....||.||..||||.|||
BPUM_0132___c     45 TCACAAGGATGCGGAGAAG-CCCGCTTTAGATCAAGTGTCATTGCATGTG     93

BSNT_00250___     97 TATGAGGGTGAATGGCTTGCAATCGTAGGTCATAACGGTTCAGGGAAATC    146
                     .||.|...|||||||||.||.||.||.|||||||||||||||||.|||||
BPUM_0132___c     94 AATCAAAATGAATGGCTCGCCATTGTTGGTCATAACGGTTCAGGTAAATC    143

BSNT_00250___    147 AACACTGGCCCGGGCATTGAATGGTTTAATTCTTCCTGAATCAGG---CG    193
                     .|||||.|||||.|.|.|||||||..|.|||.|.||.||..|.||   .|
BPUM_0132___c    144 CACACTTGCCCGTGTACTGAATGGGCTCATTTTACCGGATGCTGGAACGG    193

BSNT_00250___    194 ACATTGAGGTTGCCGGGATTCAATTGACAGAGGAATCTGTTTGGGAAGTG    243
                     .||   ||||||..|.||||.|..|.|.|||.||...|||.|||||..|.
BPUM_0132___c    194 TCA---AGGTTGGAGAGATTGAGCTAAAAGAAGAGAGTGTCTGGGATATT    240

BSNT_00250___    244 CGTAAGAAGATAGGTATGGTCTTTCAAAATCCGGATAACCAATTTGTCGG    293
                     ||.||.||..|.||.||||||||||||||.||.|||||||||||.||.||
BPUM_0132___c    241 CGCAAAAAAGTCGGAATGGTCTTTCAAAACCCAGATAACCAATTCGTTGG    290

BSNT_00250___    294 AACGACTGTTCGCGATGATGTGGCTTTTGGTTTAGAAAACAATGGTGTAC    343
                     ..|.||.|||||.||||||||||||||||||||||||||.|||||.||..
BPUM_0132___c    291 CTCAACGGTTCGTGATGATGTGGCTTTTGGTTTAGAAAATAATGGGGTTG    340

BSNT_00250___    344 CGCGGGAAGAAATGATTGAGAGAGTAGACTGGGCAGTAAAACAGGTTAAT    393
                     .|||||||...|||||.||..|.|||||.|||||.||.||||||||.|||
BPUM_0132___c    341 AGCGGGAACTGATGATAGAACGTGTAGATTGGGCTGTGAAACAGGTCAAT    390

BSNT_00250___    394 ATGCAAGATTTTCTCGATCAAGAGCCGCACCATCTCTCCGGAGGCCAAAA    443
                     |||||.||.|||||.||||||||||||||||||||.||.||.||.|||||
BPUM_0132___c    391 ATGCAGGAGTTTCTTGATCAAGAGCCGCACCATCTATCAGGCGGGCAAAA    440

BSNT_00250___    444 GCAGAGAGTTGCGATTGCGGGGGTTATTGCCGCACGTCCTGATATTATTA    493
                     |||||||||.||.|||||.||.||..||||||||.|.|||||.||.||.|
BPUM_0132___c    441 GCAGAGAGTCGCCATTGCAGGTGTACTTGCCGCAAGCCCTGACATCATGA    490

BSNT_00250___    494 TCTTAGATGAAGCAACATCCATGCTTGATCCGATCGGGCGAGAAGAAGTG    543
                     ||||.||||||||||||||.||||||||||||||.||.||.|||||||||
BPUM_0132___c    491 TCTTGGATGAAGCAACATCAATGCTTGATCCGATTGGCCGTGAAGAAGTG    540

BSNT_00250___    544 CTTGAAACGGTAAGACATTTAAAAGAGCAGGGCATGGCGACTGTCATATC    593
                     .|.||.||.||.||||...|.||.||.||.||.|.||..||.|||||.||
BPUM_0132___c    541 TTAGAGACTGTTAGACTACTGAAGGAACAAGGAACGGTCACAGTCATTTC    590

BSNT_00250___    594 CATTACACATGATCTGGATGAGGCAGCAAAAGCAGACAGGATCATTGTCA    643
                     |||.|||||||||.|.||.||.||.||.||.||||||.||.|||||||||
BPUM_0132___c    591 CATCACACATGATTTAGACGAAGCCGCCAAGGCAGACCGGGTCATTGTCA    640

BSNT_00250___    644 TGAATGGCGGTAAAAAATATGCTGAAGGGCCGCCTGAAGAGATTTTTAAA    693
                     ||||||||||.|||||||.|||.||.||..|.||.||.||..|||||.||
BPUM_0132___c    641 TGAATGGCGGGAAAAAATTTGCCGAGGGAACCCCAGAGGAAGTTTTTGAA    690

BSNT_00250___    694 TTGAATAAAGAACTTGTTCGAATCGGGCTTGATTTACCCTTCTCATTCCA    743
                     ||..|..|..|.||.||||.|||.||.||||||.|.||.|||||.|..|.
BPUM_0132___c    691 TTAGACGAGCAGCTAGTTCAAATTGGACTTGATCTGCCATTCTCCTATCG    740

BSNT_00250___    744 GCTTAGCCAGC-TTTTAAG-AGAAAATGG---ACTGGCTTTGGAAGAAAA    788
                     |.|.|||.|.| .||.||| ||.||  ||   || .||||     |.|||
BPUM_0132___c    741 GTTGAGCAAACAATTGAAGCAGCAA--GGCGTAC-CGCTT-----GCAAA    782

BSNT_00250___    789 ---CCATTTGACTCAGGAAGGGCTGGTGAAAGAGCTGTGGACATTACAAT    835
                        |||||||||.||.|||||..|||||||||||||.||||||||||.||
BPUM_0132___c    783 TGCCCATTTGACACAAGAAGGATTGGTGAAAGAGCTATGGACATTACGAT    832

BSNT_00250___    836 CAAAGATGTAG    846
                     ||||||..|||
BPUM_0132___c    833 CAAAGAATTAG    843


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00250 and BPUM_0132

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
