Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00248 and BPUM_0130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:12
# Commandline: needle
# -asequence dna-align/BSNT_00248___rpoA.1.24716.seq
# -bsequence dna-align/BPUM_0130___rpoA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00248___rpoA-BPUM_0130___rpoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00248___rpoA-BPUM_0130___rpoA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00248___rpoA
# 2: BPUM_0130___rpoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity: 837/945 (88.6%)
# Similarity: 837/945 (88.6%)
# Gaps: 0/945 ( 0.0%)
# Score: 3753.0
#
#
#=======================================
BSNT_00248___ 1 ATGATCGAGATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA 50
||||||||.|||||||||||||||||||||||||||||||||||||||||
BPUM_0130___r 1 ATGATCGAAATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA 50
BSNT_00248___ 51 TGCCAAATTTGGTAAGTTTGTCGTAGAGCCACTTGAGCGTGGATATGGTA 100
||||||.|.|||.|||||||||||||||||||||||||||||||||||||
BPUM_0130___r 51 TGCCAAGTATGGCAAGTTTGTCGTAGAGCCACTTGAGCGTGGATATGGTA 100
BSNT_00248___ 101 CAACTCTGGGTAACTCCTTACGTCGTATCCTCTTATCCTCACTCCCTGGT 150
|.|||.|.||.||||||.|.|||||||||||.|||||||||||.||||||
BPUM_0130___r 101 CCACTTTAGGGAACTCCCTTCGTCGTATCCTTTTATCCTCACTTCCTGGT 150
BSNT_00248___ 151 GCCGCTGTAACATCAATCCAGATAGATGGTGTACTGCACGAATTCTCGAC 200
||.|||||||||||.|||||||||||||||||..|.|||||||||||.||
BPUM_0130___r 151 GCAGCTGTAACATCGATCCAGATAGATGGTGTCTTACACGAATTCTCAAC 200
BSNT_00248___ 201 AATTGAAGGCGTTGTGGAAGATGTTACAACGATTATCTTACACATTAAAA 250
.||.||||||||.||.||||||||||||||||||||||||.|||||||||
BPUM_0130___r 201 GATCGAAGGCGTGGTTGAAGATGTTACAACGATTATCTTAAACATTAAAA 250
BSNT_00248___ 251 AGCTTGCATTGAAAATCTACTCTGATGAAGAGAAGACGCTAGAAATTGAT 300
||||||||.|.||||||||||||||.||||||||||||||.|||||||||
BPUM_0130___r 251 AGCTTGCACTCAAAATCTACTCTGAAGAAGAGAAGACGCTTGAAATTGAT 300
BSNT_00248___ 301 GTACAGGGTGAAGGAACTGTAACGGCAGCTGATATTACACACGATAGTGA 350
|||||.|.||||||.||||||||.||.|||||||||||||||||.||.||
BPUM_0130___r 301 GTACAAGATGAAGGTACTGTAACAGCTGCTGATATTACACACGACAGCGA 350
BSNT_00248___ 351 TGTAGAGATCTTAAATCCTGATCTTCATATCGCGACTCTTGGTGAGAATG 400
|.|.||.|||||||||||.||||||||.|||||.||||||||..||||||
BPUM_0130___r 351 TATTGAAATCTTAAATCCAGATCTTCACATCGCAACTCTTGGCAAGAATG 400
BSNT_00248___ 401 CGAGTTTCCGAGTTCGCCTTACTGCTCAAAGAGGACGTGGGTATACGCCT 450
||||.|||||.||||||.|.|||||.||||||||.||.|||||||..|||
BPUM_0130___r 401 CGAGCTTCCGTGTTCGCTTAACTGCACAAAGAGGTCGCGGGTATAATCCT 450
BSNT_00248___ 451 GCTGACGCAAACAAGAGAGACGATCAGCCAATCGGCGTGATTCCGATCGA 500
|||||.||||||||.||||||||||||||||||||.||||||||||||||
BPUM_0130___r 451 GCTGATGCAAACAAAAGAGACGATCAGCCAATCGGTGTGATTCCGATCGA 500
BSNT_00248___ 501 TTCTATCTATACGCCAGTTTCTCGTGTATCTTATCAGGTAGAGAACACTC 550
.||.||||||||.||.||.||||||||..|||||||.||.||||||||.|
BPUM_0130___r 501 CTCAATCTATACACCTGTATCTCGTGTGACTTATCAAGTGGAGAACACCC 550
BSNT_00248___ 551 GTGTAGGCCAAGTTGCAAACTATGATAAACTTACACTTGATGTTTGGACT 600
||||.||.|||.|..|.||||||||||||.|.|||||.|||||.||||||
BPUM_0130___r 551 GTGTTGGGCAAATCACTAACTATGATAAATTAACACTAGATGTATGGACT 600
BSNT_00248___ 601 GATGGAAGCACTGGACCGAAAGAAGCAATTGCGCTTGGTTCAAAGATTTT 650
|||||||||||.||||||||||||||.||.||.||.|||||.||||||||
BPUM_0130___r 601 GATGGAAGCACAGGACCGAAAGAAGCGATCGCTCTAGGTTCTAAGATTTT 650
BSNT_00248___ 651 AACTGAACACCTTAATATATTCGTTGGTTTAACTGACGAAGCTCAACATG 700
||||||||||||.||.||.||||||||.|||||||||||||||||.||||
BPUM_0130___r 651 AACTGAACACCTGAACATTTTCGTTGGGTTAACTGACGAAGCTCAGCATG 700
BSNT_00248___ 701 CTGAAATCATGGTTGAAAAAGAAGAAGATCAAAAAGAGAAAGTTCTTGAA 750
|||||||.||||||||.|||||||||||.||||||||.|||||.||||||
BPUM_0130___r 701 CTGAAATTATGGTTGAGAAAGAAGAAGACCAAAAAGAAAAAGTGCTTGAA 750
BSNT_00248___ 751 ATGACAATTGAAGAATTGGATCTTTCTGTTCGTTCTTACAACTGCTTAAA 800
||||||||||||||..|.||||||||||||||||||||||||||.||.||
BPUM_0130___r 751 ATGACAATTGAAGAGCTTGATCTTTCTGTTCGTTCTTACAACTGTTTGAA 800
BSNT_00248___ 801 GCGTGCGGGTATTAACACGGTTCAAGAGCTTGCGAACAAGACGGAAGAAG 850
|||||||||||||||.||.||||||||||||||.||||||||.|||||.|
BPUM_0130___r 801 GCGTGCGGGTATTAATACTGTTCAAGAGCTTGCTAACAAGACAGAAGAGG 850
BSNT_00248___ 851 ATATGATGAAAGTTCGAAATCTAGGACGCAAATCACTTGAAGAAGTGAAA 900
||||||||||||||||.||.||.|||||.|||||.|||||||||||||||
BPUM_0130___r 851 ATATGATGAAAGTTCGTAACCTTGGACGTAAATCTCTTGAAGAAGTGAAA 900
BSNT_00248___ 901 GCGAAACTAGAAGAACTTGGACTCGGACTTCGCAAAGACGATTGA 945
|||||||||||||||||||||||.||.|||||.||||||||||||
BPUM_0130___r 901 GCGAAACTAGAAGAACTTGGACTGGGTCTTCGTAAAGACGATTGA 945
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