Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00240 and BPUM_0122
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:11
# Commandline: needle
# -asequence dna-align/BSNT_00240___secY.1.24716.seq
# -bsequence dna-align/BPUM_0122___secY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00240___secY-BPUM_0122___secY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00240___secY-BPUM_0122___secY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00240___secY
# 2: BPUM_0122___secY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1321
# Identity: 1041/1321 (78.8%)
# Similarity: 1041/1321 (78.8%)
# Gaps: 53/1321 ( 4.0%)
# Score: 4073.0
#
#
#=======================================
BSNT_00240___ 1 TTGTTTAAAACAATCTCCAACTTTATGCGTGTGAGTGATATCAGGAATAA 50
||||||||.|||||||||||.||||||||.||||..|||||..|||||||
BPUM_0122___s 1 TTGTTTAAGACAATCTCCAATTTTATGCGCGTGAAAGATATACGGAATAA 50
BSNT_00240___ 51 AATCATATTCACTTTACTCATGCTTATCGTCTTTCGCATAGGTGCGTTTA 100
.||.|||||||||.|..|.|||.|.|||||||||||.||||||||.||.|
BPUM_0122___s 51 GATTATATTCACTCTTTTAATGTTAATCGTCTTTCGTATAGGTGCTTTCA 100
BSNT_00240___ 101 TTCCTGTGCCTTACGTTAACGCTGAAGCGTTACAGGCGCAGTCTCAAATG 150
|.|||||||||.|.||.|||||.||||...|.|||||.|||..|||||||
BPUM_0122___s 101 TCCCTGTGCCTAATGTGAACGCCGAAGTTCTCCAGGCACAGGATCAAATG 150
BSNT_00240___ 151 GGTGTTTTTGATCTCCTTAATACATTTGGCGGCGGTGCGCTTTACCAATT 200
.|||||||.|...||||.||.||.|||||.|||||.||.||||.||||||
BPUM_0122___s 151 AGTGTTTTCGGGATCCTCAACACGTTTGGGGGCGGGGCACTTTTCCAATT 200
BSNT_00240___ 201 TTCCATTTTCGCAATGGGAATTACTCCTTATATCACGGCTTCGATCATCA 250
.||||||.|.||||||||.||||..||.||||||||.|||||||||||||
BPUM_0122___s 201 CTCCATTCTTGCAATGGGGATTATGCCGTATATCACTGCTTCGATCATCA 250
BSNT_00240___ 251 TTCAGCTGCTT-CAGATGGATGTTGTACCGAAGTTTACCGAGTGGTCTAA 299
||||||| ||| ||||||||||||||.||||||||.||.||||||||.||
BPUM_0122___s 251 TTCAGCT-CTTGCAGATGGATGTTGTTCCGAAGTTCACTGAGTGGTCAAA 299
BSNT_00240___ 300 GCAAGGTGAAGTTGGCCGCCGTAAATTAGCTCAGTTCACAAGGTACTTTA 349
||||||.||||||||||||||.||||||||.||.|||||||||||.||||
BPUM_0122___s 300 GCAAGGAGAAGTTGGCCGCCGAAAATTAGCACAATTCACAAGGTATTTTA 349
BSNT_00240___ 350 CGATTGTGCTTGGTTTCATCCAAGCGTTAGGTATGTCATATGGATTCAAC 399
|.|||||.||.|||||.|||||.||||||||.||||||||||||||||||
BPUM_0122___s 350 CAATTGTTCTAGGTTTTATCCAGGCGTTAGGAATGTCATATGGATTCAAC 399
BSNT_00240___ 400 AATCTGGCAAACGGTATGCTGATCGAAAAATCCGGTGTATCGACATA--T 447
|||.|||||...||.||||||||.|||||..|.|||||.||.||.|| |
BPUM_0122___s 400 AATATGGCAGGAGGCATGCTGATTGAAAACCCAGGTGTTTCAACGTACCT 449
BSNT_00240___ 448 CTTATCATTGCTTTAGTACTCACTGGCGGAACTGCCTTTTTAATGTGGCT 497
|||| |||||..|.||||||||||..|||||.||.||||||||||||||
BPUM_0122___s 450 CTTA--ATTGCGGTCGTACTCACTGCGGGAACAGCATTTTTAATGTGGCT 497
BSNT_00240___ 498 TGGGGAACAAATTACTTCTCATGGAGTAGGCAACGGAATATCGATCATTA 547
.||.||.||.||||||.||||.||.||.||.|||||.||.|||||.||||
BPUM_0122___s 498 GGGAGAGCAGATTACTGCTCACGGCGTTGGTAACGGTATTTCGATTATTA 547
BSNT_00240___ 548 TCTTCGCGGGGATTGTGTCTAGTATTCCAAAAACAATTGGGCAAATATAT 597
||||.||.||.||..|..|..||||.||..|||||.|....|||.|.||.
BPUM_0122___s 548 TCTTTGCTGGTATCATCGCAGGTATCCCTCAAACATTAAAACAAGTGTAC 597
BSNT_00240___ 598 GAGACT---CAATTTGTCGGCAGCAACGATCAGTTGTTTATTCATATTGT 644
| || ||||||||.||..|..|.|..||||||||.||.||.||..|
BPUM_0122___s 598 G---CTCAACAATTTGTAGGTGGAGATGGACAGTTGTTCATGCAAATCCT 644
BSNT_00240___ 645 GAAAGTCGCACTTCTTGTGATTGCGATT-TTAGCAGTTATTGTTGGAGTT 693
||||.|.||.|||.||||.|||||.||| ||..|| ||.||.||||.|||
BPUM_0122___s 645 GAAAATTGCCCTTATTGTTATTGCTATTCTTGTCA-TTGTTATTGGTGTT 693
BSNT_00240___ 694 ATTTTCATTCAGCAA--GCCGTACGGAAAATTGCGATTCAATATGCTAAA 741
||||.|||||| || ||.||..|.||.|||||||||||||||.|.|||
BPUM_0122___s 694 ATTTACATTCA--AATGGCAGTGAGAAAGATTGCGATTCAATATTCAAAA 741
BSNT_00240___ 742 GGCACAGGTCGTTCAC------CTGCTGGCGGGGGTCAGTCTACACACCT 785
||.||.||.|||.||| ||||| .||||..|.||.|||||
BPUM_0122___s 742 GGAACTGGCCGTGCACAAATGTCTGCT------AGTCAAGCAACGCACCT 785
BSNT_00240___ 786 TCCATTGAAAGTGAATCCTGCAGGGGTTATTCCGGTAATCTTTGCGGTTG 835
||||||||||||||||||.||||||||.|||||.||.||||||||.|||.
BPUM_0122___s 786 TCCATTGAAAGTGAATCCAGCAGGGGTGATTCCAGTCATCTTTGCCGTTT 835
BSNT_00240___ 836 CGTTTTTGATAACGCCGCGGACGATCGCGTCATTCTTTGGAACAAACGAT 885
|.||..|.||.||.||||.||||.||||.||.|||||.|||||.||..||
BPUM_0122___s 836 CTTTCATTATTACTCCGCAGACGGTCGCATCGTTCTTCGGAACCAATAAT 885
BSNT_00240___ 886 GTGACAAAGTGGATTCAA--AACAACTTTGATAATACGCATCCGGTGGGT 933
|||||||..||||| || |||||||||||..||||..|.||..|.|||
BPUM_0122___s 886 GTGACAACTTGGAT--AACCAACAACTTTGACTATACTAAGCCAATCGGT 933
BSNT_00240___ 934 ATGGCGATATATGTTGCGTTGATTATTGCCTTTACGTACTTTTATGCTTT 983
|||.||||.|||||.||..|||||.||||.||.||.||.||||||||.||
BPUM_0122___s 934 ATGACGATTTATGTAGCACTGATTGTTGCTTTCACATATTTTTATGCCTT 983
BSNT_00240___ 984 TGTACAGGTAAACCCTGAACAAATGGCTGATAACCTTAAAAAACAGGGTG 1033
|||.||.||.||.|||||||||||||||||.||.||..||||.|||||||
BPUM_0122___s 984 TGTCCAAGTGAATCCTGAACAAATGGCTGAAAATCTGCAAAAGCAGGGTG 1033
BSNT_00240___ 1034 GCTATATCCCGGGGGTTCGTCCAGGGAAAATGACTCAAGATAGAATTACG 1083
|||||||||||||.||||||||||||||||||||||||||||||||||||
BPUM_0122___s 1034 GCTATATCCCGGGAGTTCGTCCAGGGAAAATGACTCAAGATAGAATTACG 1083
BSNT_00240___ 1084 AGCATTTTGTATCGACTTACGTTTGTGGGTTCTATATTCTTAGCCGTGAT 1133
|||||||||||.|||||.|||||||||||..|.||.||||||||||||||
BPUM_0122___s 1084 AGCATTTTGTACCGACTCACGTTTGTGGGCGCCATTTTCTTAGCCGTGAT 1133
BSNT_00240___ 1134 TTCCATTCTTCCTATCTTTTTCATTCAATTCGCTGGATTGCCT----CAA 1179
|||.||.||||||||||||||||||||||||||||||||.||| |
BPUM_0122___s 1134 TTCAATACTTCCTATCTTTTTCATTCAATTCGCTGGATTACCTTCCGC-- 1181
BSNT_00240___ 1180 AGTGCACAAATTGGCGGAACA--TCTTTGTTAATTGTTGTCGGGGTAGC- 1226
|||||||||||||||.||| |||| .|.||||||||.||.||.||
BPUM_0122___s 1182 --TGCACAAATTGGCGGCACAAGTCTT--CTCATTGTTGTAGGTGTTGCA 1227
BSNT_00240___ 1227 CTTGGAGACAATGAAACAACTAGAAAGCCAGTTGGTGAAACGAAACTACC 1276
||| ||.||||||||||||||.||||||||.||.||||||||||||||||
BPUM_0122___s 1228 CTT-GAAACAATGAAACAACTTGAAAGCCAATTAGTGAAACGAAACTACC 1276
BSNT_00240___ 1277 GTGGATTTATGAAA-AACTAG 1296
|||||||||||||| ||
BPUM_0122___s 1277 GTGGATTTATGAAATAA---- 1293
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