Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00235 and BPUM_0117
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:11
# Commandline: needle
# -asequence dna-align/BSNT_00235___rplF.1.24716.seq
# -bsequence dna-align/BPUM_0117___rplF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00235___rplF-BPUM_0117___rplF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00235___rplF-BPUM_0117___rplF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00235___rplF
# 2: BPUM_0117___rplF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 562
# Identity: 447/562 (79.5%)
# Similarity: 447/562 (79.5%)
# Gaps: 32/562 ( 5.7%)
# Score: 1809.0
#
#
#=======================================
BSNT_00235___ 1 ---------------ATGTCTCGTGTAGGTAAGAAGCTACTTGAGATTCC 35
|||||||||.|||||||.||.|||.|.|||||.||
BPUM_0117___r 1 ATGGAGGTGCTTGGTATGTCTCGTATAGGTAAAAAACTAATCGAGATCCC 50
BSNT_00235___ 36 TTCTGATGTTACAGT----AACGTTAAATGATAACAACACTGTAGCTGTG 81
|||.|..|||||.|| ||| ||.||| |||||.||..|.||.
BPUM_0117___r 51 TTCAGGAGTTACTGTGACAAAC----AACGAT---AACACAGTGACAGTA 93
BSNT_00235___ 82 AAAGGACCAAAAGGAGAATTAACTCGTACGTTTCACCCTGATATGGAGAT 131
||.|||||||||||.|||.||||||||||.|||||||||||||||||.||
BPUM_0117___r 94 AAGGGACCAAAAGGTGAACTAACTCGTACATTTCACCCTGATATGGAAAT 143
BSNT_00235___ 132 TAAAGTAGAGGACAATGTGCTT-ACAGT-CGCTCGTCCTTCTGATCAAAA 179
||||.|.|||||||..|| ||| ||.|| .|| |||||.||||||||.||
BPUM_0117___r 144 TAAAATTGAGGACAGCGT-CTTAACTGTAAGC-CGTCCGTCTGATCATAA 191
BSNT_00235___ 180 AGAGCACCGTGCCCTGCATGGTACGACTCGCAGTCTGCTTGGCAACATGG 229
|||.||||||||..|.||||||||.||.||.||..|..|||..|||||||
BPUM_0117___r 192 AGAACACCGTGCTTTACATGGTACAACACGTAGCTTAATTGCAAACATGG 241
BSNT_00235___ 230 TTGAAGGTGTATCTAAAGGATTTGAAAGAGGTTTGGAA-TTAGTCGGTGT 278
|||||||||||||||||||.||.|||||||||||.||| ||| |||||||
BPUM_0117___r 242 TTGAAGGTGTATCTAAAGGTTTCGAAAGAGGTTTAGAACTTA-TCGGTGT 290
BSNT_00235___ 279 CGGTTACCGTGCTTCTAAATCCGGAAATAAACTTGTTTTAAACGTTGGAT 328
||||||||||||..|||||||.|||||.|||||||||.|.||||||||||
BPUM_0117___r 291 CGGTTACCGTGCAGCTAAATCTGGAAACAAACTTGTTCTTAACGTTGGAT 340
BSNT_00235___ 329 ACTCTCATCCTGTTGAGATCGTTCCTGAAGAAGGCATCGAAATCGAAGTT 378
||||||||||.|||||.|||||||||||.|..||..|.|||.|.||||||
BPUM_0117___r 341 ACTCTCATCCAGTTGAAATCGTTCCTGAGGCTGGAGTAGAAGTTGAAGTT 390
BSNT_00235___ 379 CCTTCTCAAACAAAAGTAGTTGTAAAAGGTACAGACAAAGAACGCGTAGG 428
||.||||||||.||||||||..|.|||||||..||.|||||.||.||.||
BPUM_0117___r 391 CCATCTCAAACGAAAGTAGTCATTAAAGGTATCGATAAAGAGCGTGTGGG 440
BSNT_00235___ 429 AGCTATTGCTGCTAACATCCGCGCTGTACGTTCTCCAGAGCCTTACAAAG 478
||||.|.|||.||||||||||||||||.||||||||||||||||||||||
BPUM_0117___r 441 AGCTCTAGCTTCTAACATCCGCGCTGTCCGTTCTCCAGAGCCTTACAAAG 490
BSNT_00235___ 479 GTAAAGGAATCCGCTACGAAGGTGAAGTTGTTCGCCGTAAAGAAGGTAAA 528
||||||||||.||.||||||||||||.|.|||||||||||||||||.|||
BPUM_0117___r 491 GTAAAGGAATTCGTTACGAAGGTGAATTCGTTCGCCGTAAAGAAGGAAAA 540
BSNT_00235___ 529 TCTGCTAAGTAA 540
.|||.|||||||
BPUM_0117___r 541 ACTGGTAAGTAA 552
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