Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00232 and BPUM_0114

See Amino acid alignment / Visit BSNT_00232 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:11
# Commandline: needle
#    -asequence dna-align/BSNT_00232___rplE.1.24716.seq
#    -bsequence dna-align/BPUM_0114___rplE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00232___rplE-BPUM_0114___rplE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00232___rplE-BPUM_0114___rplE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00232___rplE
# 2: BPUM_0114___rplE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity:     491/540 (90.9%)
# Similarity:   491/540 (90.9%)
# Gaps:           0/540 ( 0.0%)
# Score: 2259.0
# 
#
#=======================================

BSNT_00232___      1 ATGAACCGCCTTAAAGAAAAGTACAATAAAGAAATTGCACCTGCTTTAAT     50
                     |||||||||||||||||||||||....|||||||||.|||||||.|||.|
BPUM_0114___r      1 ATGAACCGCCTTAAAGAAAAGTATGTAAAAGAAATTACACCTGCATTAGT     50

BSNT_00232___     51 GACTAAGTTCAACTATGATTCAGTCATGCAAGTGCCTAAAATCGAAAAAA    100
                     ..|||||||..|.||..|.|||||.|||||||||||.|||||||||||||
BPUM_0114___r     51 TTCTAAGTTTGAATACAAATCAGTAATGCAAGTGCCAAAAATCGAAAAAA    100

BSNT_00232___    101 TCGTAATCAACATGGGTGTTGGTGACGCTGTTCAAAACGCCAAAGCAATC    150
                     ||||.|||||||||||||||||||||||.|||||||||||.|||||||||
BPUM_0114___r    101 TCGTGATCAACATGGGTGTTGGTGACGCCGTTCAAAACGCTAAAGCAATC    150

BSNT_00232___    151 GACAGTGCTGTTGAAGAATTAACGTTTATCGCAGGTCAAAAACCTGTCGT    200
                     ||.|.|||||||||||||||||||||||||||.|||||||||||||||||
BPUM_0114___r    151 GATACTGCTGTTGAAGAATTAACGTTTATCGCTGGTCAAAAACCTGTCGT    200

BSNT_00232___    201 TACTCGTGCGAAGAAATCAATTGCTGGATTCCGTCTTCGTGAGGGAATGC    250
                     |||||||||||||||.||.|||||||||||||||||.|||||.|||||||
BPUM_0114___r    201 TACTCGTGCGAAGAAGTCTATTGCTGGATTCCGTCTACGTGAAGGAATGC    250

BSNT_00232___    251 CTATCGGTGCGAAAGTAACTCTTCGCGGAGAGCGCATGTATGATTTCCTT    300
                     |.|||||||||||||||||.||||||||||||||||||||.|||||||||
BPUM_0114___r    251 CAATCGGTGCGAAAGTAACACTTCGCGGAGAGCGCATGTACGATTTCCTT    300

BSNT_00232___    301 GATAAACTTATTTCTGTATCTTTACCGCGTGTACGTGACTTCCGCGGGGT    350
                     ||||||||||||||||||||||||||.|||||||||||||||||||||.|
BPUM_0114___r    301 GATAAACTTATTTCTGTATCTTTACCACGTGTACGTGACTTCCGCGGGAT    350

BSNT_00232___    351 TTCTAAAAAATCTTTCGACGGTCGCGGTAACTACACACTTGGTATCAAAG    400
                     ||||||.|||||||||||||||||.||.||||||||.||||||||.||||
BPUM_0114___r    351 TTCTAAGAAATCTTTCGACGGTCGTGGAAACTACACGCTTGGTATTAAAG    400

BSNT_00232___    401 AACAGTTAATCTTCCCTGAAATTGACTACGATAAAGTAACAAAGGTTCGC    450
                     ||||||||||||||||.||||||||.|||||||||||||||||.||.|||
BPUM_0114___r    401 AACAGTTAATCTTCCCAGAAATTGATTACGATAAAGTAACAAAAGTCCGC    450

BSNT_00232___    451 GGAATGGACATCGTTATCGTAACAACTGCTAATACTGACGAAGAAGCTCG    500
                     ||.|||||.|||||||||||.||.|||||.|||||.|||||||||||.||
BPUM_0114___r    451 GGTATGGATATCGTTATCGTTACGACTGCCAATACGGACGAAGAAGCACG    500

BSNT_00232___    501 TGAGCTATTAACTCAAGTAGGTATGCCGTTCCAGAAATAA    540
                     ||||.|||||||||||||||||||||||||||||||||||
BPUM_0114___r    501 TGAGTTATTAACTCAAGTAGGTATGCCGTTCCAGAAATAA    540


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