Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00229 and BPUM_0111

See Amino acid alignment / Visit BSNT_00229 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:11
# Commandline: needle
#    -asequence dna-align/BSNT_00229___rpsQ.1.24716.seq
#    -bsequence dna-align/BPUM_0111___rpsQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00229___rpsQ-BPUM_0111___rpsQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00229___rpsQ-BPUM_0111___rpsQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00229___rpsQ
# 2: BPUM_0111___rpsQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     234/264 (88.6%)
# Similarity:   234/264 (88.6%)
# Gaps:           0/264 ( 0.0%)
# Score: 1050.0
# 
#
#=======================================

BSNT_00229___      1 ATGAGCGAACGTAACCAACGCAAAGTTTACCAAGGCCGTGTTGTTTCTGA     50
                     ||||||||||||||||||||.|||||.||.|||||.||||||||||||||
BPUM_0111___r      1 ATGAGCGAACGTAACCAACGTAAAGTGTATCAAGGTCGTGTTGTTTCTGA     50

BSNT_00229___     51 CAAAATGGATAAAACCATTACTGTTGTTGTTGAGACATACAAAAAACATA    100
                     ||||||||||||||||||.||||||||.|||||.|||||||||||.|||.
BPUM_0111___r     51 CAAAATGGATAAAACCATCACTGTTGTAGTTGAAACATACAAAAAGCATT    100

BSNT_00229___    101 CACTTTACGGTAAACGCGTAAAATACTCAAAAAAATTCAAAGCACATGAT    150
                     |||||||.||.|||||.||||.||||||.|||||.||.||||||||||||
BPUM_0111___r    101 CACTTTATGGCAAACGTGTAAGATACTCTAAAAAGTTAAAAGCACATGAT    150

BSNT_00229___    151 GAAAATAATCAAGCTAAAATCGGTGACATCGTTAAGATCATGGAAACTCG    200
                     |||||.||.|||||.||||||||.||||||||.|||.|.|||||||||||
BPUM_0111___r    151 GAAAACAACCAAGCAAAAATCGGAGACATCGTAAAGGTGATGGAAACTCG    200

BSNT_00229___    201 TCCATTGTCTGCAACTAAGCGTTTCCGTCTAGTTGAAGTTGTCGAAGAAG    250
                     |||.||.|||||.|||||.||.||.|||||||||||||||||||||||||
BPUM_0111___r    201 TCCTTTATCTGCGACTAAACGCTTTCGTCTAGTTGAAGTTGTCGAAGAAG    250

BSNT_00229___    251 CTGTTATTATCTAA    264
                     |.||||||||||||
BPUM_0111___r    251 CCGTTATTATCTAA    264


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