Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00222 and BPUM_0104

See Amino acid alignment / Visit BSNT_00222 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:10
# Commandline: needle
#    -asequence dna-align/BSNT_00222___rplW.1.24716.seq
#    -bsequence dna-align/BPUM_0104___rplW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00222___rplW-BPUM_0104___rplW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00222___rplW-BPUM_0104___rplW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00222___rplW
# 2: BPUM_0104___rplW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 289
# Identity:     261/289 (90.3%)
# Similarity:   261/289 (90.3%)
# Gaps:           2/289 ( 0.7%)
# Score: 1181.0
# 
#
#=======================================

BSNT_00222___      1 ATGAAAGATCCTCGTGATGTTCTAAAGCGCCCCGTCATTACTGAACGTTC     50
                     ||||||||||||||||||||||||||||||||..||||||||||||||||
BPUM_0104___r      1 ATGAAAGATCCTCGTGATGTTCTAAAGCGCCCTATCATTACTGAACGTTC     50

BSNT_00222___     51 TGCTGATTTAATGACTGAAAAGAAATATACTTTTGAAGTTGATGTAAGAG    100
                     |||||||.|||||||.||.|||||.||.||.||.|||||||||||.||||
BPUM_0104___r     51 TGCTGATCTAATGACAGAGAAGAAGTACACGTTCGAAGTTGATGTCAGAG    100

BSNT_00222___    101 CTAACAAAACAGAAGTGAAAGACGCGGTTGAAAGCATCTTTGGAGTGAAA    150
                     ||||||||||||||||||||||.||.||||||...|||||||||||||||
BPUM_0104___r    101 CTAACAAAACAGAAGTGAAAGATGCTGTTGAAGAAATCTTTGGAGTGAAA    150

BSNT_00222___    151 GTTGACAAAGTCAAC-ATCATGAACTACAAAGGTAAATCAAAACGTGTTG    199
                     |||||.||||||||| .||| .|||||||||||.|||||.|||||.||||
BPUM_0104___r    151 GTTGAGAAAGTCAACGTTCA-AAACTACAAAGGGAAATCTAAACGCGTTG    199

BSNT_00222___    200 GACGCTACACTGGTATGACTAGCCGTCGCAGAAAAGCGATCGTAAAACTT    249
                     |||||||||||||||||||||||||||||||||||||||||||.|||.|.
BPUM_0104___r    200 GACGCTACACTGGTATGACTAGCCGTCGCAGAAAAGCGATCGTGAAATTA    249

BSNT_00222___    250 ACTGCAGACAGCAAAGAAATCGAAATTTTTGAAGCTTAA    288
                     |||||.|||||||||||||||||||||||||||||.|||
BPUM_0104___r    250 ACTGCTGACAGCAAAGAAATCGAAATTTTTGAAGCGTAA    288


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