Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00220 and BPUM_0102

See Amino acid alignment / Visit BSNT_00220 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:10
# Commandline: needle
#    -asequence dna-align/BSNT_00220___rplC.1.24716.seq
#    -bsequence dna-align/BPUM_0102___rplC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00220___rplC-BPUM_0102___rplC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00220___rplC-BPUM_0102___rplC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00220___rplC
# 2: BPUM_0102___rplC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity:     554/631 (87.8%)
# Similarity:   554/631 (87.8%)
# Gaps:           2/631 ( 0.3%)
# Score: 2450.0
# 
#
#=======================================

BSNT_00220___      1 ATGACCAAAGGAATCTTAGGAAGAAAAATTGGTATGACGCAAGTATTCGC     50
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
BPUM_0102___r      1 ATGACCAAAGGAATCTTAGGTAGAAAAATTGGTATGACGCAAGTATTCGC     50

BSNT_00220___     51 TGAGAATGGTGATCTTATTCCGGTAACTGTTATCGAGGCTGCTCCAAACG    100
                     .||.||.|||||||||||.||.|||||||||.|.|||||||||.|.||||
BPUM_0102___r     51 AGAAAACGGTGATCTTATCCCTGTAACTGTTGTTGAGGCTGCTGCTAACG    100

BSNT_00220___    101 TTGTTCTTCAAAAGAAAACAGCTGAAAACGACGGTTACGAAGCAATCCAG    150
                     ||||.|||||||||||.||..||||.|..||.||.||.|||||||||||.
BPUM_0102___r    101 TTGTCCTTCAAAAGAAGACTACTGACACGGATGGCTATGAAGCAATCCAA    150

BSNT_00220___    151 CTTGGTTTTGACGACAAGCGTGAAAAGCTTTCTAACAAACCTGAAAAAGG    200
                     .|.||||||||||||||.|||||||||||||||||||||||.|||||.||
BPUM_0102___r    151 ATCGGTTTTGACGACAAACGTGAAAAGCTTTCTAACAAACCAGAAAAGGG    200

BSNT_00220___    201 GCACGTTGCAAAAGCGGAAACTGCTCCTAAGCGCTTCGTTAAAGAATTAC    250
                     .||||||||.|||||||||||||||||||||||||||||.||||||||||
BPUM_0102___r    201 CCACGTTGCTAAAGCGGAAACTGCTCCTAAGCGCTTCGTAAAAGAATTAC    250

BSNT_00220___    251 GCGGAGTGGAAATGGATGCGTATGAAGTTGGTCAGGAAGTCAAGGTTGAA    300
                     ||||.|.|||..|.|||||||||||||||||||||||||||||.|||||.
BPUM_0102___r    251 GCGGTGCGGAGTTAGATGCGTATGAAGTTGGTCAGGAAGTCAAAGTTGAT    300

BSNT_00220___    301 ATTTTCTCTGCTGGAGAAATCGTAGATGTAACAGGAGTATCTAAAGGTAA    350
                     ||||||.|...||||||.||||||||||||||||||..|||.||||||||
BPUM_0102___r    301 ATTTTCGCAAATGGAGATATCGTAGATGTAACAGGAACATCAAAAGGTAA    350

BSNT_00220___    351 AGGTTTCCAAGGTGCGATCAAGCGCCACGGACAATCTCGCGGACCTATGT    400
                     |||.||||||||.||.||||||||||||||||||||.||||||||.|||.
BPUM_0102___r    351 AGGATTCCAAGGGGCTATCAAGCGCCACGGACAATCACGCGGACCAATGA    400

BSNT_00220___    401 CTCACGGTTCACGCTACCACCGTCGTCCTGGTTCAATGGGACCTGTAGAT    450
                     |||||||||||||.||.|||||||||||||||||||||||||||||.|||
BPUM_0102___r    401 CTCACGGTTCACGTTATCACCGTCGTCCTGGTTCAATGGGACCTGTTGAT    450

BSNT_00220___    451 CCTAACCGTGTATTCAAAGGTAAA-TTATTACCTGGACGTATGGGCGGAG    499
                     ||.|||||.|||||||||||.||| ||.|| ||.||.|||||||||||||
BPUM_0102___r    451 CCAAACCGAGTATTCAAAGGCAAACTTCTT-CCAGGTCGTATGGGCGGAG    499

BSNT_00220___    500 AGCAAATCACTGTTCAAAATCTTGAAATCGTTAAAGTTGATGCAGAACGC    549
                     |||||||||||||.|||||.|||||.||||||||||||||||||||||||
BPUM_0102___r    500 AGCAAATCACTGTCCAAAACCTTGAGATCGTTAAAGTTGATGCAGAACGC    549

BSNT_00220___    550 AATCTTCTTTTGATCAAAGGTAACGTACCTGGTGCGAAGAAATCTTTAAT    599
                     ||||||||.|||||||||||.||.|||||.||.||.||.||||||.||.|
BPUM_0102___r    550 AATCTTCTATTGATCAAAGGAAATGTACCAGGAGCTAAAAAATCTCTAGT    599

BSNT_00220___    600 CACTGTTAAAAGTGCTGTTAAATCTAAATAA    630
                     .|||||.||.|||||.|||||||||||||||
BPUM_0102___r    600 AACTGTAAAGAGTGCAGTTAAATCTAAATAA    630


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.