Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00220 and BPUM_0102
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:10
# Commandline: needle
# -asequence dna-align/BSNT_00220___rplC.1.24716.seq
# -bsequence dna-align/BPUM_0102___rplC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00220___rplC-BPUM_0102___rplC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00220___rplC-BPUM_0102___rplC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00220___rplC
# 2: BPUM_0102___rplC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity: 554/631 (87.8%)
# Similarity: 554/631 (87.8%)
# Gaps: 2/631 ( 0.3%)
# Score: 2450.0
#
#
#=======================================
BSNT_00220___ 1 ATGACCAAAGGAATCTTAGGAAGAAAAATTGGTATGACGCAAGTATTCGC 50
||||||||||||||||||||.|||||||||||||||||||||||||||||
BPUM_0102___r 1 ATGACCAAAGGAATCTTAGGTAGAAAAATTGGTATGACGCAAGTATTCGC 50
BSNT_00220___ 51 TGAGAATGGTGATCTTATTCCGGTAACTGTTATCGAGGCTGCTCCAAACG 100
.||.||.|||||||||||.||.|||||||||.|.|||||||||.|.||||
BPUM_0102___r 51 AGAAAACGGTGATCTTATCCCTGTAACTGTTGTTGAGGCTGCTGCTAACG 100
BSNT_00220___ 101 TTGTTCTTCAAAAGAAAACAGCTGAAAACGACGGTTACGAAGCAATCCAG 150
||||.|||||||||||.||..||||.|..||.||.||.|||||||||||.
BPUM_0102___r 101 TTGTCCTTCAAAAGAAGACTACTGACACGGATGGCTATGAAGCAATCCAA 150
BSNT_00220___ 151 CTTGGTTTTGACGACAAGCGTGAAAAGCTTTCTAACAAACCTGAAAAAGG 200
.|.||||||||||||||.|||||||||||||||||||||||.|||||.||
BPUM_0102___r 151 ATCGGTTTTGACGACAAACGTGAAAAGCTTTCTAACAAACCAGAAAAGGG 200
BSNT_00220___ 201 GCACGTTGCAAAAGCGGAAACTGCTCCTAAGCGCTTCGTTAAAGAATTAC 250
.||||||||.|||||||||||||||||||||||||||||.||||||||||
BPUM_0102___r 201 CCACGTTGCTAAAGCGGAAACTGCTCCTAAGCGCTTCGTAAAAGAATTAC 250
BSNT_00220___ 251 GCGGAGTGGAAATGGATGCGTATGAAGTTGGTCAGGAAGTCAAGGTTGAA 300
||||.|.|||..|.|||||||||||||||||||||||||||||.|||||.
BPUM_0102___r 251 GCGGTGCGGAGTTAGATGCGTATGAAGTTGGTCAGGAAGTCAAAGTTGAT 300
BSNT_00220___ 301 ATTTTCTCTGCTGGAGAAATCGTAGATGTAACAGGAGTATCTAAAGGTAA 350
||||||.|...||||||.||||||||||||||||||..|||.||||||||
BPUM_0102___r 301 ATTTTCGCAAATGGAGATATCGTAGATGTAACAGGAACATCAAAAGGTAA 350
BSNT_00220___ 351 AGGTTTCCAAGGTGCGATCAAGCGCCACGGACAATCTCGCGGACCTATGT 400
|||.||||||||.||.||||||||||||||||||||.||||||||.|||.
BPUM_0102___r 351 AGGATTCCAAGGGGCTATCAAGCGCCACGGACAATCACGCGGACCAATGA 400
BSNT_00220___ 401 CTCACGGTTCACGCTACCACCGTCGTCCTGGTTCAATGGGACCTGTAGAT 450
|||||||||||||.||.|||||||||||||||||||||||||||||.|||
BPUM_0102___r 401 CTCACGGTTCACGTTATCACCGTCGTCCTGGTTCAATGGGACCTGTTGAT 450
BSNT_00220___ 451 CCTAACCGTGTATTCAAAGGTAAA-TTATTACCTGGACGTATGGGCGGAG 499
||.|||||.|||||||||||.||| ||.|| ||.||.|||||||||||||
BPUM_0102___r 451 CCAAACCGAGTATTCAAAGGCAAACTTCTT-CCAGGTCGTATGGGCGGAG 499
BSNT_00220___ 500 AGCAAATCACTGTTCAAAATCTTGAAATCGTTAAAGTTGATGCAGAACGC 549
|||||||||||||.|||||.|||||.||||||||||||||||||||||||
BPUM_0102___r 500 AGCAAATCACTGTCCAAAACCTTGAGATCGTTAAAGTTGATGCAGAACGC 549
BSNT_00220___ 550 AATCTTCTTTTGATCAAAGGTAACGTACCTGGTGCGAAGAAATCTTTAAT 599
||||||||.|||||||||||.||.|||||.||.||.||.||||||.||.|
BPUM_0102___r 550 AATCTTCTATTGATCAAAGGAAATGTACCAGGAGCTAAAAAATCTCTAGT 599
BSNT_00220___ 600 CACTGTTAAAAGTGCTGTTAAATCTAAATAA 630
.|||||.||.|||||.|||||||||||||||
BPUM_0102___r 600 AACTGTAAAGAGTGCAGTTAAATCTAAATAA 630
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