Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00217 and BPUM_0100

See Amino acid alignment / Visit BSNT_00217 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:10
# Commandline: needle
#    -asequence dna-align/BSNT_00217___ybaC.1.24716.seq
#    -bsequence dna-align/BPUM_0100___ybaC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00217___ybaC-BPUM_0100___ybaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00217___ybaC-BPUM_0100___ybaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00217___ybaC
# 2: BPUM_0100___ybaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1145
# Identity:     592/1145 (51.7%)
# Similarity:   592/1145 (51.7%)
# Gaps:         373/1145 (32.6%)
# Score: 1363.5
# 
#
#=======================================

BSNT_00217___      1 ATG----------ATTCCTGAAAAGAAA---TCAATCGCAATCATGAAAG     37
                     |||          |||  ||  ||||||   |.|||||     .||   |
BPUM_0100___y      1 ATGGCGAAGACATATT--TG--AAGAAATGGTTAATCG-----GTG---G     38

BSNT_00217___     38 AACTAAGCATTGGAAATACAAAGCAAATGCTGATGATTAATGGAGTTGA-     86
                     |..|.|.||.||||                |.|||||..|.|.||.|.| 
BPUM_0100___y     39 AGTTGACCAATGGA----------------TTATGATCCAAGAAGATCAT     72

BSNT_00217___     87 ---CGTGAA--AAATCCATTGCTCCTTTTTTTACATGGCGGGCCGGGAAC    131
                        .|||||  .||.||..|.||..|.|||.||||.||.|||||.||..|
BPUM_0100___y     73 ACTAGTGAAGCGAAGCCTGTTCTATTATTTGTACACGGTGGGCCAGGTTC    122

BSNT_00217___    132 GCCGCAAATCGGATATGTTAGACAT---TATCAAAAAGAGCTGGAAC-AG    177
                     ..|.||||||.|.|||.|||   ||   |.|||..|.|||||..|.| ||
BPUM_0100___y    123 TGCTCAAATCAGTTATATTA---ATTCGTTTCATGAGGAGCTTAATCGAG    169

BSNT_00217___    178 TATTTTACAGTAGTTCATTGGGATCAGAGAGGATCGGGGCTTTCTTATTC    227
                      ||||||||||.||||||||||||||..|||||.|.||.|||||.|| ||
BPUM_0100___y    170 -ATTTTACAGTGGTTCATTGGGATCAACGAGGAGCAGGACTTTCCTA-TC    217

BSNT_00217___    228 TAAGCGAATTTCAC--ATCAC-TCTATGACAATAGATCACTTCATTAAAG    274
                     .||.| |||.||.|  || || ||.|||||.||..|.||.||.|||.|||
BPUM_0100___y    218 AAAAC-AATCTCCCCAAT-ACGTCCATGACCATTCAGCAATTTATTGAAG    265

BSNT_00217___    275 ATACAATCCAAGTCAC--------TCAATGGCTTT------TAGCTCATT    310
                     ||||.||..||.|.||        ||     ||||      |||.||   
BPUM_0100___y    266 ATACGATTGAACTGACAGAGAAAATC-----CTTTCATATCTAGGTC---    307

BSNT_00217___    311 TTTCAAAATCAAAACTTTACCTAGCCGGTCATTCTTGGGGGTCAATACTG    360
                           ||||||||.|.|||.|.|||||..||||.|||||||||.||.|.
BPUM_0100___y    308 ------AATCAAAATTGTACATCGCCGGATATTCATGGGGGTCATTAATC    351

BSNT_00217___    361 GCGCTTCATGTGCTGCAGCAGT--------GTCCTGATTTATTTTACGCG    402
                     ||..|.||        ||||||        |.||.|||.|.|.|.|.|||
BPUM_0100___y    352 GCCATACA--------AGCAGTACATAAACGCCCAGATCTTTATCATGCG    393

BSNT_00217___    403 TATTATGGAATCAGCCAGGTTGTTAACCCTCACGATGAAGAATCAACTGC    452
                     |||||||||||.||.|||||.||               |||      ||.
BPUM_0100___y    394 TATTATGGAATTAGTCAGGTGGT---------------AGA------TGT    422

BSNT_00217___    453 TTTCCAAA-----ATAT----TCGT--GAAATT-TCTAAATCAAAAAAAG    490
                     |||  |||     ||||    ||||  ||..|| |||   |.||||||  
BPUM_0100___y    423 TTT--AAAAGAAGATATTGTGTCGTACGACCTTCTCT---TGAAAAAA--    465

BSNT_00217___    491 CCAGCTTATTATCTTTCCTCACAC-----------GTTTCATTGGTG---    526
                              |||         |||           ||||..||||||   
BPUM_0100___y    466 ---------TAT---------CACCGAAATCGGCTGTTTGCTTGGTGTCT    497

BSNT_00217___    527 --------------CTCCGCCTTGGAAGCAGGA-TATCCAGCACCTTATC    561
                                   ||||.||.|||||  |.|| ||| |.||.|.|..||
BPUM_0100___y    498 GCGATTACTGACGCCTCCTCCGTGGAA--ACGATTAT-CGGCTCATGCTC    544

BSNT_00217___    562 TATCGGTTTTGTGTC--------GAGCTAAGCAGGGGAGGCTTCACTC--    601
                     ||      ||.|.||        |||||..|.||.|.|||..||||.|  
BPUM_0100___y    545 TA------TTCTCTCTATATAAAGAGCTTGGGAGCGTAGGTCTCACACAT    588

BSNT_00217___    602 --------GCCG-TCATCGTCAATCTCTA-GCTGTATTATTTCAAATGCT    641
                             |||| ||  |.||||...||| .|.||.||||||       |
BPUM_0100___y    589 AAGTGGAAGCCGCTC--CTTCAAATGCTACACAGTTTTATTT-------T    629

BSNT_00217___    642 TACTGGCAATGAGTATGGAGTGCGGAACATGCACAGC-------------    678
                     ||   |.||.||.|||                 ||||             
BPUM_0100___y    630 TA---GTAAAGAATAT-----------------CAGCTCAAAGATAAGTG    659

BSNT_00217___    679 ----TTCCTCAATGGATTGCGCTTCAGTAAAAAACATTTAAC--------    716
                         |||||.||.|||        |||      |.|||||.|        
BPUM_0100___y    660 GAAGTTCCTGAAAGGA--------CAG------AAATTTAGCCAGGACAT    695

BSNT_00217___    717 ----TGG--TGAGTTGTACCGGTTTAAT----GCTTT---TACATC-AGT    752
                         |||  |||.||      |.|.|||    ||.||   |||  | |||
BPUM_0100___y    696 GCTATGGGATGAATT------GATGAATGAGAGCATTGAATAC--CGAGT    737

BSNT_00217___    753 TCCT--TCTATTAAAGTACCGTGT---GTTTTCATTTCAGGGAAACATGA    797
                     |.||  |.||||||  ||||.|||   .||.|||||   ||..||.||||
BPUM_0100___y    738 TTCTACTATATTAA--TACCTTGTTACTTTATCATT---GGTGAATATGA    782

BSNT_00217___    798 CTTAATTGTTCCTGCTGAAATATCGAAACAGTATTATCAAGTGCTTGAGG    847
                     |.|.|||...||.||||...||||.||||..|||         .|||||.
BPUM_0100___y    783 CATGATTACACCAGCTGCTGTATCAAAACCATAT---------GTTGAGC    823

BSNT_00217___    848 CACCCGAAAAGCGC-----------TGGTTTCA--ATTTGAGAACTCAGC    884
                     .|  ..||||||||           ||| ||||  .||..|||| ||.||
BPUM_0100___y    824 AA--TTAAAAGCGCCAATCAAAGAATGG-TTCACCTTTAAAGAA-TCTGC    869

BSNT_00217___    885 TCACACCCCGCATATTGAGGAGCCGGCA----TTATTCGCGAACACATTA    930
                     .||..||||||||.|.||.||.||.|.|    ||||||||  || |||.|
BPUM_0100___y    870 ACATTCCCCGCATCTAGAAGAACCAGAAGAATTTATTCGC--AC-CATCA    916

BSNT_00217___    931 AGTCGACATGCACGACACCATTT-----------ATGA-------    957
                     |...||| |||...|||.|||.|           .|||       
BPUM_0100___y    917 AAAAGAC-TGCTGTACATCATCTTCAGGGAAAGCTTGATTTATAG    960


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