Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00217 and BPUM_0100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:10
# Commandline: needle
# -asequence dna-align/BSNT_00217___ybaC.1.24716.seq
# -bsequence dna-align/BPUM_0100___ybaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00217___ybaC-BPUM_0100___ybaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00217___ybaC-BPUM_0100___ybaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00217___ybaC
# 2: BPUM_0100___ybaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1145
# Identity: 592/1145 (51.7%)
# Similarity: 592/1145 (51.7%)
# Gaps: 373/1145 (32.6%)
# Score: 1363.5
#
#
#=======================================
BSNT_00217___ 1 ATG----------ATTCCTGAAAAGAAA---TCAATCGCAATCATGAAAG 37
||| ||| || |||||| |.||||| .|| |
BPUM_0100___y 1 ATGGCGAAGACATATT--TG--AAGAAATGGTTAATCG-----GTG---G 38
BSNT_00217___ 38 AACTAAGCATTGGAAATACAAAGCAAATGCTGATGATTAATGGAGTTGA- 86
|..|.|.||.|||| |.|||||..|.|.||.|.|
BPUM_0100___y 39 AGTTGACCAATGGA----------------TTATGATCCAAGAAGATCAT 72
BSNT_00217___ 87 ---CGTGAA--AAATCCATTGCTCCTTTTTTTACATGGCGGGCCGGGAAC 131
.||||| .||.||..|.||..|.|||.||||.||.|||||.||..|
BPUM_0100___y 73 ACTAGTGAAGCGAAGCCTGTTCTATTATTTGTACACGGTGGGCCAGGTTC 122
BSNT_00217___ 132 GCCGCAAATCGGATATGTTAGACAT---TATCAAAAAGAGCTGGAAC-AG 177
..|.||||||.|.|||.||| || |.|||..|.|||||..|.| ||
BPUM_0100___y 123 TGCTCAAATCAGTTATATTA---ATTCGTTTCATGAGGAGCTTAATCGAG 169
BSNT_00217___ 178 TATTTTACAGTAGTTCATTGGGATCAGAGAGGATCGGGGCTTTCTTATTC 227
||||||||||.||||||||||||||..|||||.|.||.|||||.|| ||
BPUM_0100___y 170 -ATTTTACAGTGGTTCATTGGGATCAACGAGGAGCAGGACTTTCCTA-TC 217
BSNT_00217___ 228 TAAGCGAATTTCAC--ATCAC-TCTATGACAATAGATCACTTCATTAAAG 274
.||.| |||.||.| || || ||.|||||.||..|.||.||.|||.|||
BPUM_0100___y 218 AAAAC-AATCTCCCCAAT-ACGTCCATGACCATTCAGCAATTTATTGAAG 265
BSNT_00217___ 275 ATACAATCCAAGTCAC--------TCAATGGCTTT------TAGCTCATT 310
||||.||..||.|.|| || |||| |||.||
BPUM_0100___y 266 ATACGATTGAACTGACAGAGAAAATC-----CTTTCATATCTAGGTC--- 307
BSNT_00217___ 311 TTTCAAAATCAAAACTTTACCTAGCCGGTCATTCTTGGGGGTCAATACTG 360
||||||||.|.|||.|.|||||..||||.|||||||||.||.|.
BPUM_0100___y 308 ------AATCAAAATTGTACATCGCCGGATATTCATGGGGGTCATTAATC 351
BSNT_00217___ 361 GCGCTTCATGTGCTGCAGCAGT--------GTCCTGATTTATTTTACGCG 402
||..|.|| |||||| |.||.|||.|.|.|.|.|||
BPUM_0100___y 352 GCCATACA--------AGCAGTACATAAACGCCCAGATCTTTATCATGCG 393
BSNT_00217___ 403 TATTATGGAATCAGCCAGGTTGTTAACCCTCACGATGAAGAATCAACTGC 452
|||||||||||.||.|||||.|| ||| ||.
BPUM_0100___y 394 TATTATGGAATTAGTCAGGTGGT---------------AGA------TGT 422
BSNT_00217___ 453 TTTCCAAA-----ATAT----TCGT--GAAATT-TCTAAATCAAAAAAAG 490
||| ||| |||| |||| ||..|| ||| |.||||||
BPUM_0100___y 423 TTT--AAAAGAAGATATTGTGTCGTACGACCTTCTCT---TGAAAAAA-- 465
BSNT_00217___ 491 CCAGCTTATTATCTTTCCTCACAC-----------GTTTCATTGGTG--- 526
||| ||| ||||..||||||
BPUM_0100___y 466 ---------TAT---------CACCGAAATCGGCTGTTTGCTTGGTGTCT 497
BSNT_00217___ 527 --------------CTCCGCCTTGGAAGCAGGA-TATCCAGCACCTTATC 561
||||.||.||||| |.|| ||| |.||.|.|..||
BPUM_0100___y 498 GCGATTACTGACGCCTCCTCCGTGGAA--ACGATTAT-CGGCTCATGCTC 544
BSNT_00217___ 562 TATCGGTTTTGTGTC--------GAGCTAAGCAGGGGAGGCTTCACTC-- 601
|| ||.|.|| |||||..|.||.|.|||..||||.|
BPUM_0100___y 545 TA------TTCTCTCTATATAAAGAGCTTGGGAGCGTAGGTCTCACACAT 588
BSNT_00217___ 602 --------GCCG-TCATCGTCAATCTCTA-GCTGTATTATTTCAAATGCT 641
|||| || |.||||...||| .|.||.|||||| |
BPUM_0100___y 589 AAGTGGAAGCCGCTC--CTTCAAATGCTACACAGTTTTATTT-------T 629
BSNT_00217___ 642 TACTGGCAATGAGTATGGAGTGCGGAACATGCACAGC------------- 678
|| |.||.||.||| ||||
BPUM_0100___y 630 TA---GTAAAGAATAT-----------------CAGCTCAAAGATAAGTG 659
BSNT_00217___ 679 ----TTCCTCAATGGATTGCGCTTCAGTAAAAAACATTTAAC-------- 716
|||||.||.||| ||| |.|||||.|
BPUM_0100___y 660 GAAGTTCCTGAAAGGA--------CAG------AAATTTAGCCAGGACAT 695
BSNT_00217___ 717 ----TGG--TGAGTTGTACCGGTTTAAT----GCTTT---TACATC-AGT 752
||| |||.|| |.|.||| ||.|| ||| | |||
BPUM_0100___y 696 GCTATGGGATGAATT------GATGAATGAGAGCATTGAATAC--CGAGT 737
BSNT_00217___ 753 TCCT--TCTATTAAAGTACCGTGT---GTTTTCATTTCAGGGAAACATGA 797
|.|| |.|||||| ||||.||| .||.||||| ||..||.||||
BPUM_0100___y 738 TTCTACTATATTAA--TACCTTGTTACTTTATCATT---GGTGAATATGA 782
BSNT_00217___ 798 CTTAATTGTTCCTGCTGAAATATCGAAACAGTATTATCAAGTGCTTGAGG 847
|.|.|||...||.||||...||||.||||..||| .|||||.
BPUM_0100___y 783 CATGATTACACCAGCTGCTGTATCAAAACCATAT---------GTTGAGC 823
BSNT_00217___ 848 CACCCGAAAAGCGC-----------TGGTTTCA--ATTTGAGAACTCAGC 884
.| ..|||||||| ||| |||| .||..|||| ||.||
BPUM_0100___y 824 AA--TTAAAAGCGCCAATCAAAGAATGG-TTCACCTTTAAAGAA-TCTGC 869
BSNT_00217___ 885 TCACACCCCGCATATTGAGGAGCCGGCA----TTATTCGCGAACACATTA 930
.||..||||||||.|.||.||.||.|.| |||||||| || |||.|
BPUM_0100___y 870 ACATTCCCCGCATCTAGAAGAACCAGAAGAATTTATTCGC--AC-CATCA 916
BSNT_00217___ 931 AGTCGACATGCACGACACCATTT-----------ATGA------- 957
|...||| |||...|||.|||.| .|||
BPUM_0100___y 917 AAAAGAC-TGCTGTACATCATCTTCAGGGAAAGCTTGATTTATAG 960
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