Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00203 and BPUM_0088
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:08
# Commandline: needle
# -asequence dna-align/BSNT_00203___rplA.1.24716.seq
# -bsequence dna-align/BPUM_0088___rplA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00203___rplA-BPUM_0088___rplA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00203___rplA-BPUM_0088___rplA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00203___rplA
# 2: BPUM_0088___rplA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 706
# Identity: 593/706 (84.0%)
# Similarity: 593/706 (84.0%)
# Gaps: 14/706 ( 2.0%)
# Score: 2505.0
#
#
#=======================================
BSNT_00203___ 1 ATGGCTAAAAAAGGTAAAAAGTACGTTGAAGCTGCTAAGCTTGTAGACCG 50
|||||||||||||||||||||||.||.||||||||||||||..|.||.||
BPUM_0088___r 1 ATGGCTAAAAAAGGTAAAAAGTATGTAGAAGCTGCTAAGCTAATCGAACG 50
BSNT_00203___ 51 TTCTAAAGCTTACGACGTCTCTGAAGCAGTAGCTCTCGTT---AAAAAAA 97
|.|||||||.||.||.||..|||||||.|| ||||| || ||||||.
BPUM_0088___r 51 TACTAAAGCGTATGATGTAGCTGAAGCTGT--CTCTC-TTACAAAAAAAG 97
BSNT_00203___ 98 CAAACACAGCTAAATTCGACGCTACAGTTGAAGTGGCTTTCCGTTTAGGG 147
||||.|||||.|||||.||.||.||.||.|||||.|||||.|||||.||.
BPUM_0088___r 98 CAAATACAGCGAAATTTGATGCGACTGTAGAAGTTGCTTTTCGTTTGGGC 147
BSNT_00203___ 148 GTTGACCCTCGTAAAAACGACCAGCAAATCCGTGGAGCAGTTGTGCTTCC 197
||.|||||||||||||||||.||.||||||||.||.||||||||.|||||
BPUM_0088___r 148 GTAGACCCTCGTAAAAACGATCAACAAATCCGCGGTGCAGTTGTACTTCC 197
BSNT_00203___ 198 AAACGGAACTGGTAAAACTCAGCGCGTTCTCGTTTTCGCAAAAGGCGAAA 247
.||||||||||||||.|||||.||||||||.||.|||||.||||||||||
BPUM_0088___r 198 TAACGGAACTGGTAAGACTCAACGCGTTCTTGTGTTCGCTAAAGGCGAAA 247
BSNT_00203___ 248 AAGCGAAAGAAGCTGAAGCTGCTGGTGCAGATTTCGTAGGCGACACTGAC 297
||||.||||||||.|||||||||||.|||||.|.|||.||.||..||||.
BPUM_0088___r 248 AAGCAAAAGAAGCAGAAGCTGCTGGAGCAGACTACGTTGGAGATTCTGAT 297
BSNT_00203___ 298 TACATCAACAAAATTCAACAAGGCTGGTTCGATTTCGATGTTATCGTAGC 347
|||||||..|||||.|||||||||||||||||.||||||||.|||||.||
BPUM_0088___r 298 TACATCACTAAAATCCAACAAGGCTGGTTCGAATTCGATGTAATCGTTGC 347
BSNT_00203___ 348 TACACCTGACATGATGGGTGAAGTTGGTAAAATCGGTCGTGTACTTGGAC 397
.|||||||||||||||||||||||||||||.|||||||||||||||||||
BPUM_0088___r 348 AACACCTGACATGATGGGTGAAGTTGGTAAGATCGGTCGTGTACTTGGAC 397
BSNT_00203___ 398 CAAAAGGTTTAATGCCAAACCCTAAAACTGGTACAGTTACTTTCGAAGTT 447
||||||||.|.|||||||||||||||||.||.||.|||||.||||||||.
BPUM_0088___r 398 CAAAAGGTCTTATGCCAAACCCTAAAACAGGAACTGTTACATTCGAAGTA 447
BSNT_00203___ 448 GAAAAAGCGATCGGCGAAATCAAAGCTGGTAAAGTTGAATACCGCGTTGA 497
||||||||.|||...||||||||||||||||||||.||.|||||||||||
BPUM_0088___r 448 GAAAAAGCAATCAATGAAATCAAAGCTGGTAAAGTAGAGTACCGCGTTGA 497
BSNT_00203___ 498 TAAAGCTGGAAACATTCATGTTCCTATCGGTAAAGTTTCTTTCGAGGATG 547
|||||||||.|||||.||.|..||.|||||.||.||||||||||||||.|
BPUM_0088___r 498 TAAAGCTGGTAACATCCACGCGCCAATCGGAAAGGTTTCTTTCGAGGACG 547
BSNT_00203___ 548 AAAAACTTGTTGAGAACTTCACAACAATGTACGATACAATCCTTAAAGCT 597
||||.||||||||||||||..|||||||.||.||.||||||||||||||.
BPUM_0088___r 548 AAAAGCTTGTTGAGAACTTTGCAACAATCTATGACACAATCCTTAAAGCA 597
BSNT_00203___ 598 AAACCTGCTGCAGCTAAAGGCGTTTACGTGAAAAACGTTGCTGTAACTTC 647
||||||||.||.||||||||.||.|||||||||||||||.||||.||.||
BPUM_0088___r 598 AAACCTGCAGCGGCTAAAGGTGTATACGTGAAAAACGTTTCTGTTACATC 647
BSNT_00203___ 648 TACTATGGGACCTGGTGTCAAAGTAGA---CTCTTCAACTTTTAAC-GTA 693
|||||||||.|||||.||.|||||.|| .||||| |||..| |.|
BPUM_0088___r 648 TACTATGGGCCCTGGCGTGAAAGTGGATCCATCTTC----TTTCTCTGCA 693
BSNT_00203___ 694 AAATAA 699
||||||
BPUM_0088___r 694 AAATAA 699
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