Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00202 and BPUM_0087

See Amino acid alignment / Visit BSNT_00202 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:07
# Commandline: needle
#    -asequence dna-align/BSNT_00202___rplK.1.24716.seq
#    -bsequence dna-align/BPUM_0087___rplK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00202___rplK-BPUM_0087___rplK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00202___rplK-BPUM_0087___rplK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00202___rplK
# 2: BPUM_0087___rplK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 481
# Identity:     400/481 (83.2%)
# Similarity:   400/481 (83.2%)
# Gaps:          56/481 (11.6%)
# Score: 1880.0
# 
#
#=======================================

BSNT_00202___      0 --------------------------------------------------      0
                                                                       
BPUM_0087___r      1 GTGGGAGGGGGATTCCCCTATTACCACATCACGGACTTTAAGGAGGTGTG     50

BSNT_00202___      1 ----GTGGCTAAAAAAGTAGTTAAAGTTGTAAAATTGCAAATTCCTGCTG     46
                         ||||||||||||||||||||||||||.|||||||||||||||||||
BPUM_0087___r     51 TCTCGTGGCTAAAAAAGTAGTTAAAGTTGTTAAATTGCAAATTCCTGCTG    100

BSNT_00202___     47 GAAAAGCTAACCCAGCACCACCAGTTGGACCTGCACTTGGTCAAGCCGGT     96
                     ||||||||||||||||.||||||||||||||||||||.||||||||||||
BPUM_0087___r    101 GAAAAGCTAACCCAGCTCCACCAGTTGGACCTGCACTAGGTCAAGCCGGT    150

BSNT_00202___     97 GTTAACATCATGGGATTCTGTAAGGAGTTTAACGCTCGTACAGCTGACCA    146
                     |||||.||||||||||||||||||||||||||.|||||||||||||||||
BPUM_0087___r    151 GTTAATATCATGGGATTCTGTAAGGAGTTTAATGCTCGTACAGCTGACCA    200

BSNT_00202___    147 AGCTGGTTTAATCATTCCTGTTGAAATTTCGGTTTACGAAGACCGTTCAT    196
                     |||||||.|.|||||||||||||||||||||||||..|||||||||||||
BPUM_0087___r    201 AGCTGGTCTTATCATTCCTGTTGAAATTTCGGTTTTTGAAGACCGTTCAT    250

BSNT_00202___    197 TTACATTTATTACAAAAACTCCACCTGCTGCAGTATTGCTTAAAAAAGCA    246
                     |||||||||||||.||||||||||||||||||||.||.||||||||||||
BPUM_0087___r    251 TTACATTTATTACTAAAACTCCACCTGCTGCAGTTTTACTTAAAAAAGCA    300

BSNT_00202___    247 GCTGGAATTGAGTCTGGTTCTGGTGAACCAAACCGTAATAAAGTGGCAAC    296
                     |||||.|||||||||||||||||||||||.||||||||||||||||||||
BPUM_0087___r    301 GCTGGTATTGAGTCTGGTTCTGGTGAACCTAACCGTAATAAAGTGGCAAC    350

BSNT_00202___    297 CGTTAAGCGCGATAAAGTACGCGAAATCGCTGAAACGAAAATGCCTGACT    346
                     .||||||||.||||||||||||||||||||.|||||.|||||||||||||
BPUM_0087___r    351 TGTTAAGCGTGATAAAGTACGCGAAATCGCGGAAACAAAAATGCCTGACT    400

BSNT_00202___    347 TAAACGCAGC-AGACGTTGAAGCGGCAATGCGCATGGTTGAAGGTACTGC    395
                     |||||||.|| || |||||||.|.||.|||||||||||||||||||||||
BPUM_0087___r    401 TAAACGCTGCTAG-CGTTGAATCAGCTATGCGCATGGTTGAAGGTACTGC    449

BSNT_00202___    396 CCGCAGTATGGGTATTGTAATCGAGGATTAA    426
                     .|||||||||||||||||.|||||.||||||
BPUM_0087___r    450 ACGCAGTATGGGTATTGTCATCGAAGATTAA    480


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