Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00192 and BPUM_0078

See Amino acid alignment / Visit BSNT_00192 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:07
# Commandline: needle
#    -asequence dna-align/BSNT_00192___cysE.1.24716.seq
#    -bsequence dna-align/BPUM_0078___cysE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00192___cysE-BPUM_0078___cysE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00192___cysE-BPUM_0078___cysE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00192___cysE
# 2: BPUM_0078___cysE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 663
# Identity:     489/663 (73.8%)
# Similarity:   489/663 (73.8%)
# Gaps:          18/663 ( 2.7%)
# Score: 1755.0
# 
#
#=======================================

BSNT_00192___      1 GTGTTTTTTAGAATGCTCAAAGAAGACATTGATACTGTGTTCGATCAAGA     50
                     ||||||||.|.||||||.||||||||.||||||||||||||.||||||||
BPUM_0078___c      1 GTGTTTTTCAAAATGCTGAAAGAAGATATTGATACTGTGTTTGATCAAGA     50

BSNT_00192___     51 TCCCGCAGCAAGAAGCTATTTTGAAGTGATTTTAACTTATTCCGGTTTAC    100
                     |||.||.||.|||||||||.|||||||..|..||||.|||||.||..|.|
BPUM_0078___c     51 TCCTGCTGCTAGAAGCTATATTGAAGTAGTGCTAACCTATTCAGGGCTTC    100

BSNT_00192___    101 ATGCTATATGGGCGCATCGGATTGCACATGCTTTATATAAACGAAAATTT    150
                     ||||.||.|||||.|||||.||.||.|||||.||.|||||.||.||..|.
BPUM_0078___c    101 ATGCGATTTGGGCTCATCGTATCGCGCATGCATTTTATAAGCGGAAGCTG    150

BSNT_00192___    151 TATTTCCTTGCACGCTTTATATCTCAAGTAAGCCGATTTTTTACCGGGAT    200
                     ||.||.||||||||..|.||.|||||.||.|||||.|||||.||.|||.|
BPUM_0078___c    151 TACTTTCTTGCACGGATCATTTCTCAGGTCAGCCGGTTTTTCACAGGGGT    200

BSNT_00192___    201 AGAAATCCACCCCGGCGCTACAATCGGGAGAAGATTTTTCATAGACCACG    250
                     .|||||.|||||.|..||.||.||.||.||..|.||.|||||.|||||||
BPUM_0078___c    201 GGAAATTCACCCTGCGGCCACCATTGGCAGGCGCTTCTTCATTGACCACG    250

BSNT_00192___    251 GCATGGGGGTTGTCATTGGGGAGACATGTGAAATCGGCAATAACGTAACC    300
                     |.|||||.||.||.||||||||.||||||||||||||..|.|||||.||.
BPUM_0078___c    251 GTATGGGAGTGGTGATTGGGGAAACATGTGAAATCGGAGACAACGTCACT    300

BSNT_00192___    301 GTTTTTCAGGGGGTTACCCTCGGGGGAACGGGGAAAGAAAAGGGAAAAAG    350
                     |||||.||.||.||.||..|.||||||||.|||||||||||||||||..|
BPUM_0078___c    301 GTTTTCCAAGGCGTGACATTAGGGGGAACAGGGAAAGAAAAGGGAAAGCG    350

BSNT_00192___    351 GCACCCAACGATTAAAGATGACGCATTGATAGCCACAGGCGCTAAAGTGC    400
                     ||||||.||.|||..|||.||.||..|.||.||.|||||.||.||.||||
BPUM_0078___c    351 GCACCCGACCATTTTAGACGATGCGCTCATTGCGACAGGTGCAAAGGTGC    400

BSNT_00192___    401 TCGGTTCTATTACGGTCGGTGAAGGCTCAAAGATTGGCGCTGGTTCAGTA    450
                     |.|||||.|||||.|||||..||||..|.|||||.||.||.||.||.||.
BPUM_0078___c    401 TTGGTTCCATTACAGTCGGAAAAGGAGCCAAGATCGGAGCGGGATCGGTC    450

BSNT_00192___    451 GTGCTGCATGATGTTCCTGATTTTTCAACAGTTGTCGGTATCCCTGGACG    500
                     ||..|..|.||.||.|||||...||||||.|||||||||||.|||||.||
BPUM_0078___c    451 GTCTTAAAGGACGTACCTGACCATTCAACGGTTGTCGGTATACCTGGGCG    500

BSNT_00192___    501 GGTAGTTGTACAAAATGGCAAGAAAGTAAGACGCGATTTAAACCATCAGG    550
                     .||.||.||.||||||||.||||||.|.|..||.|||.|.||.|||||.|
BPUM_0078___c    501 AGTCGTCGTTCAAAATGGTAAGAAAATTAATCGTGATCTCAATCATCAAG    550

BSNT_00192___    551 ATTTGCCCGATCCAGTTGCTGACCGCTTTAAGTCTTTGGAAC-AGCAGAT    599
                     |||||||.||||||.||.|.||.||.||.||....||||||| || |.||
BPUM_0078___c    551 ATTTGCCAGATCCAATTTCCGATCGTTTCAAAGAATTGGAACGAG-AAAT    599

BSNT_00192___    600 TTTAGAGCTGAAGGCAGAAC--------TTGAAGACAGAAAAGAAAGGAT    641
                     ...|.||||.||.|..||.|        ||||  .||||||.|||  ||.
BPUM_0078___c    600 GGAAAAGCTAAAAGGTGAGCTGGCTTCATTGA--GCAGAAAGGAA--GAA    645

BSNT_00192___    642 CAATCAAAAATGA    654
                     |||||    ||||
BPUM_0078___c    646 CAATC----ATGA    654


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