Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00135 and BPUM_0062
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:05
# Commandline: needle
# -asequence dna-align/BSNT_00135___folB.1.24716.seq
# -bsequence dna-align/BPUM_0062___folB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00135___folB-BPUM_0062___folB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00135___folB-BPUM_0062___folB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00135___folB
# 2: BPUM_0062___folB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 376
# Identity: 250/376 (66.5%)
# Similarity: 250/376 (66.5%)
# Gaps: 50/376 (13.3%)
# Score: 866.5
#
#
#=======================================
BSNT_00135___ 1 ATGGATAAAGTTTATGTAGAAGGTATGGAGTTTTACGGATATCACGGTGT 50
|||||.||||||||.||.||.||.||
BPUM_0062___f 1 ------------------------ATGGAATTTTACGGCTACCATGGCGT 26
BSNT_00135___ 51 GTTCAAAGAAGAAAACAAACTTGGCCAGCGGTTTAAAGTCGATTTAACCG 100
.||...|||||||||.|||.|.||.||||||||....||.||||||||.|
BPUM_0062___f 27 ATTTGCAGAAGAAAATAAATTAGGACAGCGGTTCCGCGTGGATTTAACAG 76
BSNT_00135___ 101 CTGAGCTGGATTTAAGCAAAGCTGGACAAACAGACGACCT---TGAGCAA 147
||...||.||||||||.|||||.||||||||.||.||||| ||||
BPUM_0062___f 77 CTTCACTTGATTTAAGTAAAGCCGGACAAACTGATGACCTCAATGAG--- 123
BSNT_00135___ 148 ACGATCAACTATGCTGAGCTCTATCATGTATGTAAAGATATCGTGGAAGG 197
||.|||||.|||||.||||||||.||..|.||.|||...||.||.||.||
BPUM_0062___f 124 ACCATCAATTATGCGGAGCTCTACCAAATCTGCAAAAGCATTGTAGAGGG 173
BSNT_00135___ 198 GGAGCCTGTAAAATTGGTAGAAACGCTGGCGGAACGTATTGCTGGC--AC 245
.||..|.||.||..|.||.|||||.||..|.|||.|.|||||..|| |.
BPUM_0062___f 174 TGAATCAGTCAACCTCGTTGAAACACTAACAGAAAGAATTGCAAGCCAAG 223
BSNT_00135___ 246 TGTTCTCGAAA--AATTTCAGCCTGTTCAGCAATGTACGGTGAAAGTGAT 293
|||| ||| |.||||.|.|.||||||.||||.||.|||||.|||||
BPUM_0062___f 224 TGTT----AAAGGACTTTCTGACAGTTCAGGAATGCACTGTGAAGGTGAT 269
BSNT_00135___ 294 TAAGCCAGACCCGCCAATTCCCGGACACTATAAATCAGTAGCAATTGAAA 343
|||.|||||.|||||||||||.|||||||||.|.||.||.||.|||||||
BPUM_0062___f 270 TAAACCAGATCCGCCAATTCCAGGACACTATCAGTCCGTTGCCATTGAAA 319
BSNT_00135___ 344 TTACGAGAAAAAAGT------CATGA 363
|.|||||| | |||||
BPUM_0062___f 320 TGACGAGA------TCGCGCGCATGA 339
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