Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00132 and BPUM_0060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:05
# Commandline: needle
# -asequence dna-align/BSNT_00132___pabC.1.24716.seq
# -bsequence dna-align/BPUM_0060___pabC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00132___pabC-BPUM_0060___pabC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00132___pabC-BPUM_0060___pabC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00132___pabC
# 2: BPUM_0060___pabC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1004
# Identity: 557/1004 (55.5%)
# Similarity: 557/1004 (55.5%)
# Gaps: 277/1004 (27.6%)
# Score: 1468.0
#
#
#=======================================
BSNT_00132___ 1 ---ATGATATATGTGAACGGCCGGTATATGGAGGAGAAAGATGCAGTTCT 47
||.||.|||.|||||||.|.||||||.|||||||||||.||...|||
BPUM_0060___p 1 ATGATCATTTATCTGAACGGTCAGTATATAGAGGAGAAAGACGCGACTCT 50
BSNT_00132___ 48 TTCTCCTTTTGACCATGGGTTTTTATATGGGATCGGTGTTTTCGAAACCT 97
||||||||||||.|||||.|||.|||||||.||||||||.||||||||.|
BPUM_0060___p 51 TTCTCCTTTTGATCATGGTTTTCTATATGGCATCGGTGTATTCGAAACAT 100
BSNT_00132___ 98 TCAGGCTCTACGAAGGCTGCCCG--------TTTTTGCTTGATTGGCATA 139
| ||| .||.|||.|.| |||.||.|.||||||||..
BPUM_0060___p 101 T-------TAC-CAGCCTGGCAGGACAAGTCTTTCTGTTAGATTGGCACC 142
BSNT_00132___ 140 TAGAAAGGCT---TGAA------CGCGCGCTTAAGGATCTGCAAATCGAA 180
|.|||||||| |.|| ||.|..||| ||| ||||||
BPUM_0060___p 143 TTGAAAGGCTCAATCAATCATTGCGTGACCTT-------TGC--ATCGAA 183
BSNT_00132___ 181 T-----ATACTGTTTCAAAGCATGAGATCCTTGAGATGCTGGACA----- 220
| |||..| |||.||| ||| |.||.||||
BPUM_0060___p 184 TCCACAATAGAG----AAACCAT-------TTG---TACTCGACATCATT 219
BSNT_00132___ 221 -AGCTGCTTAAGCTAAAT------GATATCAAG--GATGGTAATGC---- 257
| |.|||.| |||||| ||.|| || |..|||.||||
BPUM_0060___p 220 CA--TACTTTA-CTAAATAAAAACGACAT--AGCCGGCGGTCATGCGAGA 264
BSNT_00132___ 258 --CCGCGTCAGACTGAACATATCAGCGGGAATCAGCGATAAAGGCTTTGT 305
.|||.|| ||..||||.||||| |||.|..||.||.||| |
BPUM_0060___p 265 ATTCGCTTC------AATGTATCCGCGGG---CAGGGGCAATGGATTT-T 304
BSNT_00132___ 306 C-GCCCAGACGTACGATAAGCCGACCGTTTT----ATGCTTTGT------ 344
| |||.|..|.||.||..|.||...|||.|| |||.|.|.|
BPUM_0060___p 305 CTGCCGATCCTTATGAAGAACCTGTCGTGTTTGTCATGATCTCTCCATTC 354
BSNT_00132___ 345 ------GAATC------AGCTGA-AACCAGAAAGCCTTCCTTTGCAAAAA 381
||||| ||.||| ||.|||..|| ||..|.|.||||
BPUM_0060___p 355 CGGCCCGAATCTGTTTTAGATGAGAAACAGGGAG--TTATTCTTCAAA-- 400
BSNT_00132___ 382 GAAGGGAAGGTTTTATCGATACGGAGAAACACTCCTGAGGGATCGTTCCG 431
||| |||||||.||.||.||.||.|||...||
BPUM_0060___p 401 ----------------CGA---GGAGAAATACCCCGGAAGGTTCGAGGCG 431
BSNT_00132___ 432 GTTAAAATCTCATCATTATCTAAATAATATGTATGCGAAACGGGAAATTG 481
..|.||.|||||.||||||.|.||.||..||...||||||.|.|||.|.|
BPUM_0060___p 432 TCTCAAGTCTCACCATTATATGAACAACCTGCTCGCGAAAAGAGAAGTGG 481
BSNT_00132___ 482 GAAATGATCCGCGTGTCGAGGGAATTTTCCTAACGGAGGATGGAGCTGTT 531
|||||||||||...||.||.||.||.||..||||..|.||....|.|||.
BPUM_0060___p 482 GAAATGATCCGAAGGTAGAAGGTATCTTTTTAACAAAAGAAAATGATGTG 531
BSNT_00132___ 532 GCAGAGGGTATCATATCTAATGTCTTTTGGAGAAAAGGTCGTTGT-ATCT 580
|||||.||.||.|..||.|||||.||||||.||||||| ||.||| ||.|
BPUM_0060___p 532 GCAGAAGGAATTACCTCCAATGTATTTTGGCGAAAAGG-CGATGTGATGT 580
BSNT_00132___ 581 ATACGCCATCGCTTGATACTGGTATTCTGGACGGCGTCACGAGACG---T 627
||||.|||||.||||||||.||.|||.|..|.||.||.||..|||| |
BPUM_0060___p 581 ATACACCATCACTTGATACAGGCATTTTAAATGGGGTTACTCGACGATAT 630
BSNT_00132___ 628 TTTATCATAGAA--AATGCAAA-GAATATCGGCCTGGAG------CTCAA 668
|.|||| ||| |.|.|||| || ||||| ||.||
BPUM_0060___p 631 TGTATC---GAAACACTCCAAACGA---------TGGAGGCTTCACTAAA 668
BSNT_00132___ 669 AACGGGCCGATATGAGCTAGAAGCTCTC----TTG---ACAGCTGACGAA 711
|...||.|||||| |.|| |||| ||| .|||||||.||.
BPUM_0060___p 669 AGTAGGGCGATAT---CCAG----TCTCCCATTTGCTATCAGCTGATGAG 711
BSNT_00132___ 712 GCGTGGATGACGAACTCGGTTC--------------TT--GAAAT----- 740
||.||||||||.||.||.|||| || |||.|
BPUM_0060___p 712 GCATGGATGACCAATTCTGTTCAAGGGATTGTGCCTTTCAGAAGTATAGG 761
BSNT_00132___ 741 ---CATC-CCGTTTACTAAAATAGAAGAA----GTAAACTATGGAAGCCA 782
|||| ||.|||.|.|.||.||.|||| .|.|| ||
BPUM_0060___p 762 AGACATCTCCTTTTCCCACAACAGCAGAATCTTCTCAA----------CA 801
BSNT_00132___ 783 AAGCGGAGAAGCAACCTCCGCTCTTCAATTGTTATACAAAAAAGAAATAA 832
||...||||| .|||| |||||| ||
BPUM_0060___p 802 AAATTGAGAA-------------CTCAA----TATACA----------AA 824
BSNT_00132___ 833 AGAACAT---GATTCATGAAAAG-GGAGGAAGAGCATGGCGCAGCACACA 878
|||||.| |||| || |||| |.||
BPUM_0060___p 825 AGAACGTCTAGATT-AT--AAAGAGTAG---------------------- 849
BSNT_00132___ 879 ATAG 882
BPUM_0060___p 849 ---- 849
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