Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00129 and BPUM_0058
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:05
# Commandline: needle
# -asequence dna-align/BSNT_00129___pabB.1.24716.seq
# -bsequence dna-align/BPUM_0058___pabB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00129___pabB-BPUM_0058___pabB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00129___pabB-BPUM_0058___pabB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00129___pabB
# 2: BPUM_0058___pabB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1584
# Identity: 1042/1584 (65.8%)
# Similarity: 1042/1584 (65.8%)
# Gaps: 252/1584 (15.9%)
# Score: 3531.0
#
#
#=======================================
BSNT_00129___ 1 TTGGAAGAGAAATTCACTTTTTTCACTCACAACATTGCTTTACAATTAAA 50
BPUM_0058___p 0 -------------------------------------------------- 0
BSNT_00129___ 51 AACAAGTAAAAAAGAAAATAGAGGAATGATACAAATGGCACAACGCAGAC 100
|||.||||||||||.|
BPUM_0058___p 1 ----------------------------------ATGACACAACGCAGGC 16
BSNT_00129___ 101 CGGCAGGCAAAAAAGTACCTTTTCAAAAAGACTCATTCT--------TAC 142
||...||||..|||.|.||||||...|||||..|||||| |||
BPUM_0058___p 17 CGATGGGCATCAAAATTCCTTTTACGAAAGATGCATTCTTGAAAAGATAC 66
BSNT_00129___ 143 -AACAATTTGAGAAACTTGCGCAATCCCG-AAAACACCATGTACTTCTCG 190
||||||| |||| || |..|| ||.|||||||||.||.||.|
BPUM_0058___p 67 GAACAATT-----AACT---GC--TGGCGTAACACACCATGTTCTGCTTG 106
BSNT_00129___ 191 AAAGTGCAAGAGGCGGCAGATACAGTATAGCCGGTCTTGATCCAATTGCG 240
|||||||..|.||.||....|||||.||.||.|||.||.|.||||||||.
BPUM_0058___p 107 AAAGTGCTCGCGGTGGTTCCTACAGCATTGCTGGTATTCACCCAATTGCT 156
BSNT_00129___ 241 ACTGTGAAAGGAAAAGACGGAATAACTACAATTAAGCATGGTGATGAGAT 290
|..|.|||.||.||||||||.||.||.||.||..|..||...||||||.|
BPUM_0058___p 157 AAAGCGAAGGGTAAAGACGGGATGACAACCATCCATTATCAAGATGAGGT 206
BSNT_00129___ 291 GCTGTTTAAAGAAGGTGATCCATTACGGGCCTTCCACAG-CTGGTTTAAA 339
||||||.|||||||||||||||||..|.||.|| .||.| .|||||..||
BPUM_0058___p 207 GCTGTTCAAAGAAGGTGATCCATTCAGAGCGTT-TACGGATTGGTTCCAA 255
BSNT_00129___ 340 ACGCTGGAAACAGAAACGAATCATGAGTTCCCTGACTTTCAAGGCGGGGC 389
||.||..||||.|||||||||.|.||.|.||||||.||||||||||||||
BPUM_0058___p 256 ACCCTTCAAACTGAAACGAATGAGGAATACCCTGATTTTCAAGGCGGGGC 305
BSNT_00129___ 390 AATCGGGTTTCTCAGCTATGATTACGCACGGTACATTGAAAATTTTAAAA 439
.||.||.|||.|.|||||||||||.||..|.||.|||||..|||||||.|
BPUM_0058___p 306 GATTGGATTTTTAAGCTATGATTATGCTAGATATATTGAGCATTTTAAGA 355
BSNT_00129___ 440 TGCTCT-CATTAGATGATCTAGAAACACCAGATATTTATTTTCTTGTTTT 488
||.|.| |||| |||||.||..|||||||||||.||||||||||.||.||
BPUM_0058___p 356 TGTTGTCCATT-GATGACCTGAAAACACCAGATCTTTATTTTCTCGTGTT 404
BSNT_00129___ 489 TGATGATATAGCAGTTTATGACCATCAAGAAGAGTCTCTATGGCTGATTA 538
|.|||||.|.||.||.|.|||.|||.|||||.|....||.||||||||||
BPUM_0058___p 405 TAATGATGTTGCGGTCTTTGATCATGAAGAAAACATGCTGTGGCTGATTA 454
BSNT_00129___ 539 CTCA------------------TGTTAATGGTTCTGATCAGGAAACAGCG 570
|||| |||.|.||...||.||| |||
BPUM_0058___p 455 CTCACACAGAGGGAGCGGAACCTGTGAGTGACACTCATC---AAA----- 496
BSNT_00129___ 571 GATGTGAAGCTATCTGAGTTAGAGCAGATGTGG-------CTG--ACTGA 611
||...||| ||.|||.||||.|.|||| ||| |.|||
BPUM_0058___p 497 GACTCGAA-------GATTTAAAGCAAAAGTGGACAAGCTCTGCAAATGA 539
BSNT_00129___ 612 ------GC-TTCCCGCTGTCTCTTTGCGAGAGATGAACC--CTGAAACAG 652
|| .||.| |||| || ||||||| ||| .||
BPUM_0058___p 540 ATCAGTGCAATCAC-CTGT-TC----------ATGAACCTTCTG---TAG 574
BSNT_00129___ 653 A--TGGTTCCTTCGCGGCGCCATTTACCGAGGA------TGGGTTCTCAC 694
| |.||.|| .||.|||||.||||||||.|| ||| |.
BPUM_0058___p 575 AATTTGTACC--AGCAGCGCCTTTTACCGAAGAAACCTTTGG------AG 616
BSNT_00129___ 695 AAGCTGTAGAGAAAATCAAACAATACATTGCCAGCGGAGATGTGTTTCAA 744
||||.||||||||.||.||.|||||.||.||.|||||.||||||||.|||
BPUM_0058___p 617 AAGCAGTAGAGAAGATTAAGCAATATATCGCAAGCGGTGATGTGTTCCAA 666
BSNT_00129___ 745 GTCAATCTATCAATAAGGCA----GTCACAGTCACTGTCTGCCCAC---- 786
||.|||.||||.||.||.|| | .|||| ||.|.|||
BPUM_0058___p 667 GTGAATTTATCCATCAGACAAGATG-AACAG-------CTCCACACACAT 708
BSNT_00129___ 787 CCATATCAAATTTACAAAACCTTGAGAGAAGTAAATCCTTCTCCTTATAT 836
||.|||.||.|.||||||||.||..|..||||.|||||.||.||||||||
BPUM_0058___p 709 CCGTATGAATTATACAAAACGTTACGTCAAGTCAATCCATCCCCTTATAT 758
BSNT_00129___ 837 GGCGTATTTAGAAACACCTGATTTCCAAATCATTTGCGGCTCGCCTGAAC 886
|.|.|||||..|.||.|||||||||||.||..||||.||.||.||.||.|
BPUM_0058___p 759 GTCTTATTTGCACACGCCTGATTTCCAGATTGTTTGTGGATCTCCAGAGC 808
BSNT_00129___ 887 TGCTTG--TCAGCAAAAAGGGCAAGCTATTAGAGACGAGACCGATTGCGG 934
|| ||| |.|| ||||||||.|..|.|.||||.||.|||||||||||||
BPUM_0058___p 809 TG-TTGATTAAG-AAAAAGGGAACTCAACTAGAAACAAGACCGATTGCGG 856
BSNT_00129___ 935 GCACCCGTTCCAGAGGGAAAACAAATGAAGAAGACGAG------GTGCTT 978
|.||..|.||.|||||.||| ||.||.|..||| |.|||.
BPUM_0058___p 857 GTACAAGATCAAGAGGCAAA------GACGAGGCTGAGGATCACGCGCTG 900
BSNT_00129___ 979 GCAAACGA----ATTGATACACAATGAAAAAGAACGCGCGGAACATGTCA 1024
|||||.|| |||| |.||||||||||||||||||||.|||||.|
BPUM_0058___p 901 GCAAAAGAGCTCATTG----AAAATGAAAAAGAACGCGCGGAGCATGTGA 946
BSNT_00129___ 1025 TGCTGGTTGATCTTGAGCGAAATGATCTGGGAAGAGTATCGCGTTACGGG 1074
||||.||.|||||||||||.|||||.||.|||.|.||.||...|||.||.
BPUM_0058___p 947 TGCTCGTGGATCTTGAGCGGAATGACCTTGGACGCGTGTCCACTTATGGC 996
BSNT_00129___ 1075 TCTGTGCGCGTAAATGAATTCATGGCAATTGAAAAATACTCGCATGTAAT 1124
||.||..|.||.||.|||||.|||||.|||||||||||.||.||.|||||
BPUM_0058___p 997 TCAGTAAGAGTGAACGAATTTATGGCGATTGAAAAATATTCACACGTAAT 1046
BSNT_00129___ 1125 GCACATTGTGTCTAATGTCCAAGGTGAACTGCAGGATGGGTATGATGCTG 1174
|||||||||.||.||.||.||.||.|||||||..||||..|.||||||.|
BPUM_0058___p 1047 GCACATTGTATCCAACGTACAGGGGGAACTGCGTGATGATTGTGATGCAG 1096
BSNT_00129___ 1175 TTGATATTATTCAT----GCTGTGTTTCCCGGAGGAACCATTACTGGTGC 1220
|.||| .|||| ||.||.||.||.|||||.||.|||||.|||||
BPUM_0058___p 1097 TAGAT----GTCATGAGAGCCGTATTCCCAGGAGGCACAATTACAGGTGC 1142
BSNT_00129___ 1221 ACCGAAAGTAAGAACGATGGAAATAATAGAAGAACTTGAGCCGACACGCC 1270
.||.||.||.|||||.||||||||.||||||||.||||||||.|||.|.|
BPUM_0058___p 1143 TCCAAAGGTGAGAACAATGGAAATCATAGAAGAGCTTGAGCCAACAAGGC 1192
BSNT_00129___ 1271 GGGGGCTTTATACTGGATCTATAGGATGGTTTGGATATAATCACGATCTG 1320
|.|||||||||||||||||||||||.||||||||||..|||||.|||.||
BPUM_0058___p 1193 GTGGGCTTTATACTGGATCTATAGGCTGGTTTGGATTCAATCAAGATATG 1242
BSNT_00129___ 1321 CAGTTTAATATCGTCATTCGAACCATTTA-TGCAACCGGAGGGC-AGGCA 1368
||.|||||.|||||||||||.||....|| |||| |.||.||| |.||.
BPUM_0058___p 1243 CACTTTAACATCGTCATTCGTACGGCGTACTGCA--CTGAAGGCAAAGCC 1290
BSNT_00129___ 1369 TTTATGCAGTCCGGCGCAGGAGTTGTGATTGATTCTGTTCCGAAGCACGA 1418
|||||||||||.||.||.||..||||.||.||||||||.||.||||||||
BPUM_0058___p 1291 TTTATGCAGTCGGGTGCTGGGATTGTCATCGATTCTGTACCAAAGCACGA 1340
BSNT_00129___ 1419 ATACAAGGAATC-ATTCAAAAAAGCTTTTGCGATGCAAAGAGCATTAGAG 1467
||||||.||||| ||| ||||||||.|.|||..||.|||.|||||||.||
BPUM_0058___p 1341 ATACAAAGAATCGATT-AAAAAAGCCTATGCAGTGAAAAAAGCATTACAG 1389
BSNT_00129___ 1468 CTGAGCAAAGAAGAGACAA----AAATTAGATGA 1497
.||||||||||||||||.| .|.||||
BPUM_0058___p 1390 TTGAGCAAAGAAGAGACTATTTTGAGTTAG---- 1419
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