Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00116 and BPUM_0049
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:03
# Commandline: needle
# -asequence dna-align/BSNT_00116___yabS.1.24716.seq
# -bsequence dna-align/BPUM_0049___yabS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00116___yabS-BPUM_0049___yabS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00116___yabS-BPUM_0049___yabS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00116___yabS
# 2: BPUM_0049___yabS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 773
# Identity: 542/773 (70.1%)
# Similarity: 542/773 (70.1%)
# Gaps: 73/773 ( 9.4%)
# Score: 1826.5
#
#
#=======================================
BSNT_00116___ 1 --GTGAACAACGGACATTTAAATCAAATTTTGCTGATAACGGATGGCTGC 48
|.|| ||.||.||..||||.|||||.||..||||.||.|||||||||
BPUM_0049___y 1 ATGCGA--AAAGGTCACGTAAACCAAATCTTATTGATTACAGATGGCTGC 48
BSNT_00116___ 49 TCAAACCATGGGGAAGACCCGCTTGCAATGGCTGCTTTTGCTAAAGAGCA 98
|||||.||.||||||||.||.|||||.||.||..|.||.||.||.||.||
BPUM_0049___y 49 TCAAATCACGGGGAAGATCCACTTGCGATTGCCTCATTGGCAAAGGAACA 98
BSNT_00116___ 99 GGGGATTACGGTAAATGTTATTGGTATAATGGAAGAAAATCAAATTGAC- 147
.||||||||.||.|||||||||||.||.|||||.||||| || |||
BPUM_0049___y 99 AGGGATTACAGTCAATGTTATTGGCATTATGGAGGAAAA-CA----GACA 143
BSNT_00116___ 148 ----CCTGAGGCAATGAAGGAAGTCGAAGGGATTGCACTTGCCGGAGGAG 193
|.|||.||||||||.|||||.|||||.|||||.||.||.||.||||
BPUM_0049___y 144 CGATCATGAAGCAATGAAAGAAGTTGAAGGAATTGCTCTCGCAGGTGGAG 193
BSNT_00116___ 194 GCGTGCACCAAGTCGTTTATGCATCTCAGC---TTTCACAAACTGTTCAA 240
||.|.||.|||||.||.|| |.|| |||| |.||.|||||.||.|||
BPUM_0049___y 194 GCATTCATCAAGTGGTCTA--CGTC-CAGCAGTTATCTCAAACGGTACAA 240
BSNT_00116___ 241 ATGGTAACAAAAAAAGCGATGACGCAAACCTTACAAGGTGTAGTCAATCA 290
|||||.|||||||||||||||||.||||||||.||||||||.||.|||.|
BPUM_0049___y 241 ATGGTTACAAAAAAAGCGATGACACAAACCTTGCAAGGTGTTGTGAATAA 290
BSNT_00116___ 291 AGAACTGAAACAGATTCTCGGAAAGAATGTGGAAATGGAAGAGCTTTCCC 340
||||.||.|.||.||.||.||.|||.|....|||||.|||||||||.|.|
BPUM_0049___y 291 AGAATTGCAGCAAATACTTGGCAAGGACACTGAAATTGAAGAGCTTCCGC 340
BSNT_00116___ 341 CGGAAAAACGCGGCGAAGTCATGGAAGTGGTAGACGAGCTTGGAGAAACG 390
|.||.||.||.||.|||||.||||||||.||.||.|||.|.|||||.|||
BPUM_0049___y 341 CTGATAAGCGTGGGGAAGTGATGGAAGTAGTCGATGAGTTAGGAGAGACG 390
BSNT_00116___ 391 GTGCATCTTCAGGTTTTGGTTCTTGTTGATACAAGTGCAAGTATGGCGCC 440
||.||||||||.||..|.||.||||||||||||||||||||||||..|||
BPUM_0049___y 391 GTTCATCTTCAAGTGCTTGTGCTTGTTGATACAAGTGCAAGTATGAAGCC 440
BSNT_00116___ 441 AAAGCTTCCAACAGTAAAAGAGGCACTGATTGATTTGTCTGTAAGCCTCA 490
.||||||||.||.||.|||||.|||||.||||||.|.||..|.||..|.|
BPUM_0049___y 441 GAAGCTTCCGACCGTTAAAGAAGCACTCATTGATCTCTCCATTAGTTTAA 490
BSNT_00116___ 491 ATTCTCGAATCGG-GAATAACGAATTTGCGATGTGTATATTTCCCGGGAA 539
||||..||||.|| ||| ||..|.||||..||||||||||||||||||||
BPUM_0049___y 491 ATTCAAGAATTGGTGAA-AATCAGTTTGGAATGTGTATATTTCCCGGGAA 539
BSNT_00116___ 540 AAAACAAGAGGTCGAGCTTGTGCTGAACTGGACAC--CGA--AGCTGCA- 584
|||...|||.|..||..|||||.||||.|||||.| ||| .|.|.||
BPUM_0049___y 540 AAACTCAGATGCTGAAATTGTGTTGAATTGGACGCCTCGATTCGATTCAC 589
BSNT_00116___ 585 -ATC-TCTTTCCACACTCTTTGCA-AAGCTTTCGACAGGCGGCATCACGC 631
||| |||.| |||.|| ||.||..|.||.||.||.|||||.|
BPUM_0049___y 590 TATCATCTAT--------TTTCCAGAAACTGACCACGGGGGGAATCACCC 631
BSNT_00116___ 632 CGACAGGTCCGGCAATTCGTGAAGCGACACTGCAG--TTTGAAA-AAATA 678
|.||.||.||.||..||||.|||| ||||.||| |||.||| .|.|.
BPUM_0049___y 632 CAACTGGACCAGCGCTTCGAGAAG---CACTCCAGCATTTCAAATCAGTT 678
BSNT_00116___ 679 CGCTCAAG-AAGGGGCATGCTGGCAG------------ATGATGAACGAC 715
||.||..| ||.|||| ||||.|.|| ||||||||
BPUM_0049___y 679 CGTTCGCGTAAAGGGC-TGCTTGAAGCAAAGGAAGAGCATGATGAA---- 723
BSNT_00116___ 716 GCTTTGACGAGTTTGGCATGTAG 738
||.| ||||...|
BPUM_0049___y 724 --TTCG----GTTTCTAA----- 735
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