Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00087 and BPUM_0034
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:01
# Commandline: needle
# -asequence dna-align/BSNT_00087___gcaD.1.24716.seq
# -bsequence dna-align/BPUM_0034___gcaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00087___gcaD-BPUM_0034___gcaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00087___gcaD-BPUM_0034___gcaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00087___gcaD
# 2: BPUM_0034___gcaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1419
# Identity: 1058/1419 (74.6%)
# Similarity: 1058/1419 (74.6%)
# Gaps: 66/1419 ( 4.7%)
# Score: 3854.5
#
#
#=======================================
BSNT_00087___ 1 ------------------------------ATGGATAAGCGGTTTGCAGT 20
||||||||||||||.|||||
BPUM_0034___g 1 ATGGATAATAGGGATATTGGAGGCCAATCAATGGATAAGCGGTTCGCAGT 50
BSNT_00087___ 21 TGTTTTAGCGGCTGGACAAGGAACGAGAATGAAATCGAAGCTTTATAAAG 70
..|||||||.||.|||.||||||||||||||||.||.|||||.||.||||
BPUM_0034___g 51 GATTTTAGCAGCGGGAAAAGGAACGAGAATGAAGTCAAAGCTATACAAAG 100
BSNT_00087___ 71 TCCTTCATCCAGTTTGCGGTAAGCCTATGGTAGAGCACGTCGTGGACGAA 120
|.|||||||||||||||||.||.||.|||||.|||||.||.|..||||||
BPUM_0034___g 101 TACTTCATCCAGTTTGCGGAAAACCAATGGTCGAGCATGTGGCAGACGAA 150
BSNT_00087___ 121 GCCTTAAAATTATCTTTATCGAAGCTTGTCACGATTGTCGGACATGGTGC 170
||.|||||..|.||||||.|.|||||.||.|||||||||||.|||||.||
BPUM_0034___g 151 GCGTTAAAGCTTTCTTTAGCCAAGCTAGTGACGATTGTCGGTCATGGAGC 200
BSNT_00087___ 171 GGAAGAAGTGAAAAAGCAGCTTGGTGATAAAAGCGAGTACGCGCTTCAAG 220
.||.||.||.|||.||||||||||.||.|.|||.|||||.||.|||||||
BPUM_0034___g 201 AGAGGACGTCAAAGAGCAGCTTGGAGACAGAAGTGAGTATGCACTTCAAG 250
BSNT_00087___ 221 CAGAACAGCTTGGCACTGCTCATGCTGTAAAACAGGCACAGCCATTTCTT 270
.|||||||||.||.||.||.|||||.||.|||||.|||.||.|.||.|||
BPUM_0034___g 251 AAGAACAGCTAGGAACAGCACATGCCGTCAAACAAGCAAAGTCGTTCCTT 300
BSNT_00087___ 271 GCTGACGAAAAAGGCGTCACAATTGTCATTTGCGGAGATACGCCGCTTTT 320
||..|.|||||.||....||.|||||||||||.||.||||||||..|.||
BPUM_0034___g 301 GCGCAGGAAAAGGGAACAACCATTGTCATTTGTGGTGATACGCCATTATT 350
BSNT_00087___ 321 GACAGCAGAGACGATGGAACAGATGCTGAAAGAACATGCACAAAGA-GAA 369
||||||.||.||.||||||...|||.|||..||.||| ||.|||.| .||
BPUM_0034___g 351 GACAGCGGAAACAATGGAAGCTATGTTGAGCGAGCAT-CAAAAACATCAA 399
BSNT_00087___ 370 GCGAAAGCTACGATTTTAACTGCGGTTGCAGAAGATCCAACTGGATACGG 419
|||||||..||.||||||||.||...|||.|||||.||.||.||.||.||
BPUM_0034___g 400 GCGAAAGTCACTATTTTAACAGCACGTGCGGAAGACCCGACAGGTTATGG 449
BSNT_00087___ 420 CCGCATTATTCGCAGCGAAAACGGAGCGGTTCAAAAAATCGTTGAGCATA 469
.||.||||||||....||||.|||.||.|||...|||||.||.|||||||
BPUM_0034___g 450 TCGTATTATTCGTGATGAAACCGGTGCTGTTGTGAAAATTGTGGAGCATA 499
BSNT_00087___ 470 AGGACGCCTCTGAAGAAGAACGTCTTGTAACTGAGATCAACACCGGTACG 519
|.||.||...|||.|.||||||||..||.|.|||.||.||.||.||.||.
BPUM_0034___g 500 AAGATGCGAATGATGCAGAACGTCAAGTGAATGAAATTAATACAGGGACC 549
BSNT_00087___ 520 TATTG-TTTTGACAATGAAGCGCTATTTCGGGCTATTGATCAGGTGTCTA 568
||||| ||||.| |||||||..||.||.||.|..|||||.||.||.||.|
BPUM_0034___g 550 TATTGCTTTTCA-AATGAAGATCTCTTCCGTGTGATTGAGCAAGTATCGA 598
BSNT_00087___ 569 ATGATAATGCCCAAGGCGAGTATTATTTGCCGGATGTCATAGAGATTCTT 618
||||.|||||.|||||.||.||.||||||||.||.|||||.||.||| ||
BPUM_0034___g 599 ATGAAAATGCTCAAGGTGAATACTATTTGCCAGACGTCATTGAAATT-TT 647
BSNT_00087___ 619 AAA-AATGAAGGCGAAACTGTTGCCGCTTACCAGACT-GGTAATTTCCAA 666
||| ||||||||..||||.|||||.||.||.||.||| .|.||||| .|.
BPUM_0034___g 648 AAAGAATGAAGGGCAAACAGTTGCAGCGTATCAAACTCCGCAATTT-GAG 696
BSNT_00087___ 667 GAAACGCTCGGAGTTAATGATAGAGTTGCTCTTTCTCAGGCAGAACAATT 716
|||||.||.|||||.||||||.|..|.|||||.||.||.|||||.|||||
BPUM_0034___g 697 GAAACACTTGGAGTCAATGATCGTATCGCTCTATCACAAGCAGAGCAATT 746
BSNT_00087___ 717 TATGAAAGAG-CGCATTAATAAACGGCATATGCAAAATGGCGTGACGTTG 765
.||| |||.| ||.||||||.|.|.|||||||.|||||||.|||||.|||
BPUM_0034___g 747 CATG-AAGCGACGTATTAATCATCAGCATATGAAAAATGGTGTGACCTTG 795
BSNT_00087___ 766 ATCGA-CCCGATGAATACGTATATTTCTCCTGACGCTGTTATCG--GAAG 812
||.|| ||.|| |||.|||||||||||.|||||.||.|||||.| |||
BPUM_0034___g 796 ATTGATCCTGA-GAACACGTATATTTCACCTGATGCAGTTATTGGTGAA- 843
BSNT_00087___ 813 CGATACTGTGATTTACCCTGGAACTGTGATTAAAGGTGAGGTGCAAATCG 862
|||||..|||||||.|||||.||.||.||.|||||..|.|||.||||||
BPUM_0034___g 844 -GATACAATGATTTATCCTGGGACGGTCATCAAAGGGAATGTGAAAATCG 892
BSNT_00087___ 863 GAGAAGATACGATTATTGGCCCTCATACGGAGATTATGAATAGTGCCATT 912
|.|.|||..|.||||||||.||..|.||.||.|||.|..|.||...|||.
BPUM_0034___g 893 GTGCAGACGCTATTATTGGGCCAAACACTGAAATTGTTGACAGCATCATC 942
BSNT_00087___ 913 GGCAG-CCGTACGGTTATTAAACAATCGGTAGTCAATCACAGTAAAGTGG 961
|| || |||.||.||.|||||.|||||.||.|||....|.|||.|.|| .
BPUM_0034___g 943 GG-AGACCGCACAGTGATTAAGCAATCTGTCGTCTGCGATAGTGAGGT-T 990
BSNT_00087___ 962 GGAAT-GATGTAAACATAGGACCTTTTGCTCACATCAGACC-TGATTCTG 1009
|||.| |||||.|..||.||.||.||||||||.||..|.|| | ||
BPUM_0034___g 991 GGAGTCGATGTGACAATTGGGCCGTTTGCTCATATTCGCCCGT-----TG 1035
BSNT_00087___ 1010 TC----ATCGGGAATGAAGTGAAGATCGGGAATTTTGTAGAAATTAAAAA 1055
|| ||.||..||||||||||.||||||||||||||.|||||.||.||
BPUM_0034___g 1036 TCGAAAATTGGCGATGAAGTGAAAATCGGGAATTTTGTCGAAATCAAGAA 1085
BSNT_00087___ 1056 GACTCAATTCGGAGACCGAAGCAAGGCATCTCATCTAAGCTATGTCGGCG 1105
.||....|||||||||||.|||||.|.||||||||||||||||.|.||.|
BPUM_0034___g 1086 AACGGTTTTCGGAGACCGCAGCAAAGTATCTCATCTAAGCTATATTGGAG 1135
BSNT_00087___ 1106 ATGCTGAGGTAGGCACTGATGTAAACCTGGGCTGCGGTTCAATTACTGTC 1155
||||.|||||.||.||||||||||||||.|||||.||.||.|||||.|||
BPUM_0034___g 1136 ATGCAGAGGTCGGAACTGATGTAAACCTTGGCTGTGGATCGATTACAGTC 1185
BSNT_00087___ 1156 AATTATGATGGAAAGAATAAGTATTTGACAAAAATTGAAGATGGCGCGTT 1205
|||||||||||.|||||.||.|..||.||.||.||||||||||||||.||
BPUM_0034___g 1186 AATTATGATGGGAAGAACAAATTCTTAACGAAGATTGAAGATGGCGCATT 1235
BSNT_00087___ 1206 TATCGGCTGTAATTCCAACTTGGTTGCCCCTGTCACAGTCGGAGAAGGCG 1255
|||.|||||||||||.||..|.||.||.||.|||||.||||||.||||.|
BPUM_0034___g 1236 TATTGGCTGTAATTCAAATCTCGTGGCACCAGTCACTGTCGGAAAAGGGG 1285
BSNT_00087___ 1256 CTTATGTGGCGGCAGGTTCAACTGTTACGGAAGATGTACCTGGAA--AAG 1303
|.|||||.||.||.||||||||.|||||.||||||||||| |.| |.|
BPUM_0034___g 1286 CATATGTTGCAGCTGGTTCAACGGTTACAGAAGATGTACC--GCAGGATG 1333
BSNT_00087___ 1304 CACTTG-CTATTGCCAGAGCGAGACAAGTAAATAAAGACGATTATGTGAA 1352
|| ||| |||||||.|||||.||||||||.||||||||.|||||||||||
BPUM_0034___g 1334 CA-TTGTCTATTGCTAGAGCAAGACAAGTCAATAAAGAAGATTATGTGAA 1382
BSNT_00087___ 1353 AAATATTCATAAAAAATAA 1371
|||||||||||||||||||
BPUM_0034___g 1383 AAATATTCATAAAAAATAA 1401
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