Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00087 and BPUM_0034

See Amino acid alignment / Visit BSNT_00087 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:01
# Commandline: needle
#    -asequence dna-align/BSNT_00087___gcaD.1.24716.seq
#    -bsequence dna-align/BPUM_0034___gcaD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00087___gcaD-BPUM_0034___gcaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00087___gcaD-BPUM_0034___gcaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00087___gcaD
# 2: BPUM_0034___gcaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1419
# Identity:    1058/1419 (74.6%)
# Similarity:  1058/1419 (74.6%)
# Gaps:          66/1419 ( 4.7%)
# Score: 3854.5
# 
#
#=======================================

BSNT_00087___      1 ------------------------------ATGGATAAGCGGTTTGCAGT     20
                                                   ||||||||||||||.|||||
BPUM_0034___g      1 ATGGATAATAGGGATATTGGAGGCCAATCAATGGATAAGCGGTTCGCAGT     50

BSNT_00087___     21 TGTTTTAGCGGCTGGACAAGGAACGAGAATGAAATCGAAGCTTTATAAAG     70
                     ..|||||||.||.|||.||||||||||||||||.||.|||||.||.||||
BPUM_0034___g     51 GATTTTAGCAGCGGGAAAAGGAACGAGAATGAAGTCAAAGCTATACAAAG    100

BSNT_00087___     71 TCCTTCATCCAGTTTGCGGTAAGCCTATGGTAGAGCACGTCGTGGACGAA    120
                     |.|||||||||||||||||.||.||.|||||.|||||.||.|..||||||
BPUM_0034___g    101 TACTTCATCCAGTTTGCGGAAAACCAATGGTCGAGCATGTGGCAGACGAA    150

BSNT_00087___    121 GCCTTAAAATTATCTTTATCGAAGCTTGTCACGATTGTCGGACATGGTGC    170
                     ||.|||||..|.||||||.|.|||||.||.|||||||||||.|||||.||
BPUM_0034___g    151 GCGTTAAAGCTTTCTTTAGCCAAGCTAGTGACGATTGTCGGTCATGGAGC    200

BSNT_00087___    171 GGAAGAAGTGAAAAAGCAGCTTGGTGATAAAAGCGAGTACGCGCTTCAAG    220
                     .||.||.||.|||.||||||||||.||.|.|||.|||||.||.|||||||
BPUM_0034___g    201 AGAGGACGTCAAAGAGCAGCTTGGAGACAGAAGTGAGTATGCACTTCAAG    250

BSNT_00087___    221 CAGAACAGCTTGGCACTGCTCATGCTGTAAAACAGGCACAGCCATTTCTT    270
                     .|||||||||.||.||.||.|||||.||.|||||.|||.||.|.||.|||
BPUM_0034___g    251 AAGAACAGCTAGGAACAGCACATGCCGTCAAACAAGCAAAGTCGTTCCTT    300

BSNT_00087___    271 GCTGACGAAAAAGGCGTCACAATTGTCATTTGCGGAGATACGCCGCTTTT    320
                     ||..|.|||||.||....||.|||||||||||.||.||||||||..|.||
BPUM_0034___g    301 GCGCAGGAAAAGGGAACAACCATTGTCATTTGTGGTGATACGCCATTATT    350

BSNT_00087___    321 GACAGCAGAGACGATGGAACAGATGCTGAAAGAACATGCACAAAGA-GAA    369
                     ||||||.||.||.||||||...|||.|||..||.||| ||.|||.| .||
BPUM_0034___g    351 GACAGCGGAAACAATGGAAGCTATGTTGAGCGAGCAT-CAAAAACATCAA    399

BSNT_00087___    370 GCGAAAGCTACGATTTTAACTGCGGTTGCAGAAGATCCAACTGGATACGG    419
                     |||||||..||.||||||||.||...|||.|||||.||.||.||.||.||
BPUM_0034___g    400 GCGAAAGTCACTATTTTAACAGCACGTGCGGAAGACCCGACAGGTTATGG    449

BSNT_00087___    420 CCGCATTATTCGCAGCGAAAACGGAGCGGTTCAAAAAATCGTTGAGCATA    469
                     .||.||||||||....||||.|||.||.|||...|||||.||.|||||||
BPUM_0034___g    450 TCGTATTATTCGTGATGAAACCGGTGCTGTTGTGAAAATTGTGGAGCATA    499

BSNT_00087___    470 AGGACGCCTCTGAAGAAGAACGTCTTGTAACTGAGATCAACACCGGTACG    519
                     |.||.||...|||.|.||||||||..||.|.|||.||.||.||.||.||.
BPUM_0034___g    500 AAGATGCGAATGATGCAGAACGTCAAGTGAATGAAATTAATACAGGGACC    549

BSNT_00087___    520 TATTG-TTTTGACAATGAAGCGCTATTTCGGGCTATTGATCAGGTGTCTA    568
                     ||||| ||||.| |||||||..||.||.||.|..|||||.||.||.||.|
BPUM_0034___g    550 TATTGCTTTTCA-AATGAAGATCTCTTCCGTGTGATTGAGCAAGTATCGA    598

BSNT_00087___    569 ATGATAATGCCCAAGGCGAGTATTATTTGCCGGATGTCATAGAGATTCTT    618
                     ||||.|||||.|||||.||.||.||||||||.||.|||||.||.||| ||
BPUM_0034___g    599 ATGAAAATGCTCAAGGTGAATACTATTTGCCAGACGTCATTGAAATT-TT    647

BSNT_00087___    619 AAA-AATGAAGGCGAAACTGTTGCCGCTTACCAGACT-GGTAATTTCCAA    666
                     ||| ||||||||..||||.|||||.||.||.||.||| .|.||||| .|.
BPUM_0034___g    648 AAAGAATGAAGGGCAAACAGTTGCAGCGTATCAAACTCCGCAATTT-GAG    696

BSNT_00087___    667 GAAACGCTCGGAGTTAATGATAGAGTTGCTCTTTCTCAGGCAGAACAATT    716
                     |||||.||.|||||.||||||.|..|.|||||.||.||.|||||.|||||
BPUM_0034___g    697 GAAACACTTGGAGTCAATGATCGTATCGCTCTATCACAAGCAGAGCAATT    746

BSNT_00087___    717 TATGAAAGAG-CGCATTAATAAACGGCATATGCAAAATGGCGTGACGTTG    765
                     .||| |||.| ||.||||||.|.|.|||||||.|||||||.|||||.|||
BPUM_0034___g    747 CATG-AAGCGACGTATTAATCATCAGCATATGAAAAATGGTGTGACCTTG    795

BSNT_00087___    766 ATCGA-CCCGATGAATACGTATATTTCTCCTGACGCTGTTATCG--GAAG    812
                     ||.|| ||.|| |||.|||||||||||.|||||.||.|||||.|  ||| 
BPUM_0034___g    796 ATTGATCCTGA-GAACACGTATATTTCACCTGATGCAGTTATTGGTGAA-    843

BSNT_00087___    813 CGATACTGTGATTTACCCTGGAACTGTGATTAAAGGTGAGGTGCAAATCG    862
                      |||||..|||||||.|||||.||.||.||.|||||..|.|||.||||||
BPUM_0034___g    844 -GATACAATGATTTATCCTGGGACGGTCATCAAAGGGAATGTGAAAATCG    892

BSNT_00087___    863 GAGAAGATACGATTATTGGCCCTCATACGGAGATTATGAATAGTGCCATT    912
                     |.|.|||..|.||||||||.||..|.||.||.|||.|..|.||...|||.
BPUM_0034___g    893 GTGCAGACGCTATTATTGGGCCAAACACTGAAATTGTTGACAGCATCATC    942

BSNT_00087___    913 GGCAG-CCGTACGGTTATTAAACAATCGGTAGTCAATCACAGTAAAGTGG    961
                     || || |||.||.||.|||||.|||||.||.|||....|.|||.|.|| .
BPUM_0034___g    943 GG-AGACCGCACAGTGATTAAGCAATCTGTCGTCTGCGATAGTGAGGT-T    990

BSNT_00087___    962 GGAAT-GATGTAAACATAGGACCTTTTGCTCACATCAGACC-TGATTCTG   1009
                     |||.| |||||.|..||.||.||.||||||||.||..|.|| |     ||
BPUM_0034___g    991 GGAGTCGATGTGACAATTGGGCCGTTTGCTCATATTCGCCCGT-----TG   1035

BSNT_00087___   1010 TC----ATCGGGAATGAAGTGAAGATCGGGAATTTTGTAGAAATTAAAAA   1055
                     ||    ||.||..||||||||||.||||||||||||||.|||||.||.||
BPUM_0034___g   1036 TCGAAAATTGGCGATGAAGTGAAAATCGGGAATTTTGTCGAAATCAAGAA   1085

BSNT_00087___   1056 GACTCAATTCGGAGACCGAAGCAAGGCATCTCATCTAAGCTATGTCGGCG   1105
                     .||....|||||||||||.|||||.|.||||||||||||||||.|.||.|
BPUM_0034___g   1086 AACGGTTTTCGGAGACCGCAGCAAAGTATCTCATCTAAGCTATATTGGAG   1135

BSNT_00087___   1106 ATGCTGAGGTAGGCACTGATGTAAACCTGGGCTGCGGTTCAATTACTGTC   1155
                     ||||.|||||.||.||||||||||||||.|||||.||.||.|||||.|||
BPUM_0034___g   1136 ATGCAGAGGTCGGAACTGATGTAAACCTTGGCTGTGGATCGATTACAGTC   1185

BSNT_00087___   1156 AATTATGATGGAAAGAATAAGTATTTGACAAAAATTGAAGATGGCGCGTT   1205
                     |||||||||||.|||||.||.|..||.||.||.||||||||||||||.||
BPUM_0034___g   1186 AATTATGATGGGAAGAACAAATTCTTAACGAAGATTGAAGATGGCGCATT   1235

BSNT_00087___   1206 TATCGGCTGTAATTCCAACTTGGTTGCCCCTGTCACAGTCGGAGAAGGCG   1255
                     |||.|||||||||||.||..|.||.||.||.|||||.||||||.||||.|
BPUM_0034___g   1236 TATTGGCTGTAATTCAAATCTCGTGGCACCAGTCACTGTCGGAAAAGGGG   1285

BSNT_00087___   1256 CTTATGTGGCGGCAGGTTCAACTGTTACGGAAGATGTACCTGGAA--AAG   1303
                     |.|||||.||.||.||||||||.|||||.|||||||||||  |.|  |.|
BPUM_0034___g   1286 CATATGTTGCAGCTGGTTCAACGGTTACAGAAGATGTACC--GCAGGATG   1333

BSNT_00087___   1304 CACTTG-CTATTGCCAGAGCGAGACAAGTAAATAAAGACGATTATGTGAA   1352
                     || ||| |||||||.|||||.||||||||.||||||||.|||||||||||
BPUM_0034___g   1334 CA-TTGTCTATTGCTAGAGCAAGACAAGTCAATAAAGAAGATTATGTGAA   1382

BSNT_00087___   1353 AAATATTCATAAAAAATAA   1371
                     |||||||||||||||||||
BPUM_0034___g   1383 AAATATTCATAAAAAATAA   1401


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.