Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00082 and BPUM_0030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:01
# Commandline: needle
# -asequence dna-align/BSNT_00082___ispE.1.24716.seq
# -bsequence dna-align/BPUM_0030___ipk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00082___ispE-BPUM_0030___ipk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00082___ispE-BPUM_0030___ipk.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00082___ispE
# 2: BPUM_0030___ipk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 909
# Identity: 640/909 (70.4%)
# Similarity: 640/909 (70.4%)
# Gaps: 69/909 ( 7.6%)
# Score: 2151.5
#
#
#=======================================
BSNT_00082___ 1 GTGAAAGCTATGCGTATTTTAGAAAAAGCGCCAGCTAAGATCAATCTGTC 50
.|||||||||||||||||||.||.||.||.||.|||||.||
BPUM_0030___i 1 ---------TTGCGTATTTTAGAAAAAGCACCGGCAAAAATTAATCTCTC 41
BSNT_00082___ 51 ACTTGACG-TCACCCGAAAACGCCCGGATGGCTATCATGAAGTCGAAATG 99
||||||.| ||| ..|||||.|.||||||||.|||||.|||||.||.|||
BPUM_0030___i 42 ACTTGATGTTCA-TGGAAAAAGACCGGATGGATATCACGAAGTGGAGATG 90
BSNT_00082___ 100 ATCATGACGACAATTGATTTAGCTGATCGAATTGAATTGACGGAGCTTG- 148
.|.|||||.|||||.||..|.||.||||||.|.||..||||||||||.|
BPUM_0030___i 91 GTGATGACAACAATAGACCTTGCAGATCGACTAGAGCTGACGGAGCTGGA 140
BSNT_00082___ 149 CAGAGGATGAAGTGAGGGTTTCCTCCCACAACCGATTTGTGCCTGATGAC 198
|| ||||||||.|..|.||.||.||.||.||.|||||.|||||.|||||.
BPUM_0030___i 141 CA-AGGATGAAATCCGTGTATCATCTCATAATCGATTCGTGCCAGATGAT 189
BSNT_00082___ 199 CAAAGAAACTTAGCTTATCAGGCTGCCAAGCTGATCAAGGACAGATACAA 248
||..|.||.||.||.||||||||.||.||..|..||| |.||||
BPUM_0030___i 190 CAGCGTAATTTGGCATATCAGGCGGCTAAATTACTCA-------AAACAA 232
BSNT_00082___ 249 CG--------TGAAAAAGGGAGTTTCCATCATGATTACGAAGGTAATTCC 290
.| |.||||| ||.||.|||||..|.||.||.||...||||||
BPUM_0030___i 233 GGTTCGGTATTCAAAAA-GGTGTATCCATTGTCATCACAAAAACAATTCC 281
BSNT_00082___ 291 GGTGGCTGCCGGTCTTGCCGGCGGGAGCAGTGATGCGGCGGCGACGCTCA 340
.||.||.||.|||.|.||.||.||.|||||||||||.||.||..|.||..
BPUM_0030___i 282 AGTAGCAGCAGGTTTGGCTGGAGGCAGCAGTGATGCAGCAGCAGCACTTC 331
BSNT_00082___ 341 GAGGGCTGAACAGACTGTGGAATTTAAATCT---GTCTGCGGAAACGCTT 387
|.||..|.||..|..|||||||.||.||.|| ||..|..||| ||.
BPUM_0030___i 332 GCGGCTTAAATCGTTTGTGGAAGTTGAACCTCACGTTAGATGAA---CTA 378
BSNT_00082___ 388 GCTGAGCTTGGAGCGGAAATTGGCTCTGACGTTTCATTTTGTGTCTATGG 437
|||||||||||.|||||.||.|||||.||.||.||.||||||||..||||
BPUM_0030___i 379 GCTGAGCTTGGGGCGGAGATCGGCTCAGATGTGTCTTTTTGTGTACATGG 428
BSNT_00082___ 438 CGGAACTGCATTAGCAACAGGGCGCGGCGAGAAAA--TTAAACATATCAG 485
.||.||.|||.||||.|||||.||.| ||||||| |.||.||||| .|
BPUM_0030___i 429 AGGCACAGCACTAGCGACAGGACGTG--GAGAAAAGCTGAAGCATAT-TG 475
BSNT_00082___ 486 C-ACGCCTCCGCACTGCTGGGTCATTTTAGCGAAGCCGACTATCGGTGTT 534
| ||.||.||.||.||||||||.|||||||||||||||...||.||.||.
BPUM_0030___i 476 CGACACCGCCACATTGCTGGGTGATTTTAGCGAAGCCGGTGATTGGGGTA 525
BSNT_00082___ 535 TCAACTGCTGAAGTGTACAGA---------GC--GCTGAAACTGGATGGT 573
||.||.||.|||||.||.||| || || |||
BPUM_0030___i 526 TCTACAGCAGAAGTCTATAGACAATATGACGCAAGC--AAA--------- 564
BSNT_00082___ 574 ATAGAGCATCCCG-ATGTACAAGGAATGATCGAGGCGATAGAAG-AAAAG 621
.||||.|| |||| |||||.|..|.|||||.||.|||||.|||| .||||
BPUM_0030___i 565 GTAGAACA-CCCGAATGTAGAGCGTATGATTGAAGCGATTGAAGCGAAAG 613
BSNT_00082___ 622 AGTTTTCAGGAGATGTGCAGC-CGTTTAGGCAATGTGCTTGAATCTGTTA 670
| ||.|.|.|||||||||.|| || .|.||.||.||.|||||.|||||.|
BPUM_0030___i 614 A-TTATAAAGAGATGTGCGGCTCG-CTCGGAAACGTTCTTGAGTCTGTGA 661
BSNT_00082___ 671 CGCTCGATATGCATCCTGAAGTTGCAATGATCAAAAACCAGATGAAACGC 720
|..|..|.|||.||||.|||||.|..||||||||||..||||||||.||.
BPUM_0030___i 662 CATTAAAGATGTATCCAGAAGTAGATATGATCAAAAGACAGATGAAGCGT 711
BSNT_00082___ 721 TTTGGTGCAGATGCCGTGTTAATGAGCGGGAGCGGCCCGACAGTGTTTGG 770
||.|||||.||.||.||.||||||||.||.||||||||.|||||.|||||
BPUM_0030___i 712 TTCGGTGCTGACGCTGTTTTAATGAGTGGTAGCGGCCCTACAGTATTTGG 761
BSNT_00082___ 771 ACTGGTTCAGTATGAGTCGAAGGTGCAGAGAATTTATAACGGGTTAAGAG 820
..||.||||.|||||.||||||||.||.|||||.||||||||..|.||||
BPUM_0030___i 762 TTTGATTCAATATGAATCGAAGGTACAAAGAATATATAACGGACTGAGAG 811
BSNT_00082___ 821 GCTTCTGCGATCAAGTTTATGCGGTGAGAATGATCGGCGAACAGAACGCT 870
|.||.||.||||||||.||.||.||..|.||||||||||||||.||.||.
BPUM_0030___i 812 GGTTTTGTGATCAAGTATACGCTGTCCGCATGATCGGCGAACAAAATGCC 861
BSNT_00082___ 871 CTTGATTAA 879
|||||||||
BPUM_0030___i 862 CTTGATTAA 870
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