Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00076 and BPUM_0025

See Amino acid alignment / Visit BSNT_00076 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:00
# Commandline: needle
#    -asequence dna-align/BSNT_00076___rnmV.1.24716.seq
#    -bsequence dna-align/BPUM_0025___rnmV.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00076___rnmV-BPUM_0025___rnmV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00076___rnmV-BPUM_0025___rnmV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00076___rnmV
# 2: BPUM_0025___rnmV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 576
# Identity:     420/576 (72.9%)
# Similarity:   420/576 (72.9%)
# Gaps:          30/576 ( 5.2%)
# Score: 1467.0
# 
#
#=======================================

BSNT_00076___      1 ATGAAAATTAAAGAGATCATTGTGGTCGAGGGGCGTGACGATACGGCCCG     50
                     ||||||||.|||||.|||||||||||.||.||.||||||||.||.||..|
BPUM_0025___r      1 ATGAAAATCAAAGAAATCATTGTGGTGGAAGGTCGTGACGACACTGCGAG     50

BSNT_00076___     51 CATCAAATTGGCTGTTGATGCAGACACAATTGAAACAAATGGTTCAGCCA    100
                     ..|.||..||||.|||||||||||.||.||.||||||||.||.|||||||
BPUM_0025___r     51 AGTGAAGATGGCAGTTGATGCAGATACGATCGAAACAAACGGATCAGCCA    100

BSNT_00076___    101 TCGATGAT-CATGTGATTGACCAAATCCGTTTGGCCCAGAAGACGAGAGG    149
                     |.|..||| || ||.|||.|.|||.|.|||.|.||.|||.||||||||||
BPUM_0025___r    101 TTGGCGATACA-GTTATTCAACAAGTGCGTCTTGCTCAGGAGACGAGAGG    149

BSNT_00076___    150 CGTCATTATTTTAACGGATCCGGACTTTCCGGGAGAGAAGATTCGCAAAA    199
                     .||||||||||||||.|||||.||.||.||.||.||||||||.||.||||
BPUM_0025___r    150 GGTCATTATTTTAACTGATCCTGATTTCCCTGGGGAGAAGATCCGGAAAA    199

BSNT_00076___    200 CCATCTCAGAGGCTGTACCCGGCTGTAAGCATGCATTTTTGCCAAAACAT    249
                     ||||..||||.||.||.||.|||||||||||.||||||||||||||||||
BPUM_0025___r    200 CCATTGCAGAAGCGGTTCCTGGCTGTAAGCACGCATTTTTGCCAAAACAT    249

BSNT_00076___    250 CTTGCCAAACCTAAAAACAAGCGG------GGAATTGGTGTGGAGCATGC    293
                     |||||.||..|      .||||||      |||||||||||.||||||||
BPUM_0025___r    250 CTTGCGAAGGC------GAAGCGGGACAAAGGAATTGGTGTCGAGCATGC    293

BSNT_00076___    294 ATCGGTTGAAAGCATTAGGGCATGTTTAGAAAATGTGCATGAGGAGATGG    343
                     .||..|.||.||.|||.|||.|||..|.|...||||.||||||||.||||
BPUM_0025___r    294 TTCTTTGGACAGTATTCGGGAATGCCTTGCCCATGTCCATGAGGAAATGG    343

BSNT_00076___    344 AAG---CGCAGCCGAGTGACATTTCAGCTGAGGATTTGATTCATGCCGGA    390
                     |||   ||.|   .|||||.|||.||...||.||.||..||.|.||.||.
BPUM_0025___r    344 AAGTAACGGA---AAGTGATATTACATTAGATGACTTATTTGACGCAGGC    390

BSNT_00076___    391 CTAATAGGCGG-GCATGCGGCCAAATGCCGCCGGGAACGACTGGGTGATC    439
                     ||.||.||.|| |.|| |..|.|||.|.|||||.|||.||||.||||..|
BPUM_0025___r    391 CTTATCGGAGGCGAAT-CATCGAAACGTCGCCGCGAAAGACTAGGTGTGC    439

BSNT_00076___    440 TGTTGAAAATCGGCTATACAAATGGCAAACAGCTTCAAAAACGGCTGCAA    489
                     |.||.||.||.||.|||||.||||..||.|||||.||.||.||.||.||.
BPUM_0025___r    440 TTTTAAATATAGGATATACCAATGCGAAGCAGCTGCATAAGCGCCTTCAC    489

BSNT_00076___    490 ATGTTTCAAATTAAAAAAAGTGATTTTATGAGTGCG---CTCGATACCGT    536
                     |||||.|||||.|..|||..|||||||||   ||||   .|..|.|||||
BPUM_0025___r    490 ATGTTCCAAATAACCAAACATGATTTTAT---TGCGGCCTTAAAGACCGT    536

BSNT_00076___    537 TATGCGGGAGGAA-CAGAATGAATAA    561
                     .||||.||||||| |.| ||||||||
BPUM_0025___r    537 CATGCAGGAGGAAGCCG-ATGAATAA    561


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