Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00068 and BPUM_0018

See Amino acid alignment / Visit BSNT_00068 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00068___yabB.1.24716.seq
#    -bsequence dna-align/BPUM_0018___yabB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00068___yabB-BPUM_0018___yabB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00068___yabB-BPUM_0018___yabB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00068___yabB
# 2: BPUM_0018___yabB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 777
# Identity:     531/777 (68.3%)
# Similarity:   531/777 (68.3%)
# Gaps:          66/777 ( 8.5%)
# Score: 1731.0
# 
#
#=======================================

BSNT_00068___      1 ATGGTTTCATTACATGATGATGAAAGATTAGATTATTTGCTGGCAGAGGA     50
                     ||||||||.|||...||.||||||.||||||||||||||||.||.||.||
BPUM_0018___y      1 ATGGTTTCGTTAAGAGAAGATGAACGATTAGATTATTTGCTCGCCGAAGA     50

BSNT_00068___     51 CATGAAAATCATACAAAGCCCAACAGTGTTTGCTTTTTCGTTGGACGCTG    100
                     .|||||.||.||.|||||...|||.||.||.||.|||||.||||||||.|
BPUM_0018___y     51 TATGAAGATTATTCAAAGTAAAACGGTTTTCGCCTTTTCATTGGACGCAG    100

BSNT_00068___    101 TGCTTCTGT--CCAAATTTGCGTACGTTCCGATTCAAAAAGGGAAAATTG    148
                     | |||.| |  |.|||||||||||.||.||.||.||||||||..|.||..
BPUM_0018___y    101 T-CTTAT-TAGCAAAATTTGCGTATGTGCCCATCCAAAAAGGAGAGATCA    148

BSNT_00068___    149 TTGATTTATGCACCGGCAATGGTATTGTGCCGCTGCTGCTCAGTACAAGA    198
                     |||||.|.||.||.||.|||||.||||||||..|||||||....||..||
BPUM_0018___y    149 TTGATCTTTGTACAGGAAATGGCATTGTGCCATTGCTGCTTTCGACTCGA    198

BSNT_00068___    199 TCAAAAGCAGACATTCTGGGAGTCGAAATTCAAGAAAGGCTGCATGATAT    248
                     ||.||.||...||||..||||||.|||||||||||..||||...||||||
BPUM_0018___y    199 TCTAAGGCTTCCATTACGGGAGTTGAAATTCAAGATCGGCTTTTTGATAT    248

BSNT_00068___    249 GGCTGTTCGCAGCGTGGAGTATAATAAGCTGGACGATCAGATCCAGA--T    296
                     |||.....|.||.||||.|||||||.|.||.||..|.|||||  |||  |
BPUM_0018___y    249 GGCAAAAAGAAGTGTGGCGTATAATCAACTTGAAAAGCAGAT--AGAACT    296

BSNT_00068___    297 CATACATGATGACCTGAAAAACATGCCGGAGAA----ACTTGG-----AC    337
                     .||.||||.|||.|||||..|.|||||  ||.|    ||  ||     ||
BPUM_0018___y    297 GATTCATGGTGATCTGAATGATATGCC--AGCACGCTAC--GGCAATCAC    342

BSNT_00068___    338 ATAATCGATATGATGTTGTCACCTGCAATCCGCCGTATTTTAAAACGCCG    387
                     |.|.|     .|||||..||||.||.||||||||.||||||||      |
BPUM_0018___y    343 AAAGT-----AGATGTCATCACATGTAATCCGCCATATTTTAA------G    381

BSNT_00068___    388 AAACAAACTGAACAAAACATGAACGAGCAT-----CT---CCGAATCGCA    429
                     |.||...||.|..||.|.||.||.|||.||     ||   ||  ||.||.
BPUM_0018___y    382 ACACCTTCTAAGGAAGAGATTAATGAGAATGAATACTTGGCC--ATTGCT    429

BSNT_00068___    430 AGACATGAAATCCACTGCACGCTGGAGGATGTCAT---------TTCAGT    470
                     .|.|||||||||||.||.||..|.||.|||||.||         |||   
BPUM_0018___y    430 CGGCATGAAATCCATTGTACATTAGAAGATGTTATCCGCGTTTCTTC---    476

BSNT_00068___    471 CAGCAGCAAGCTGCTCAAGCAAGGGGGAAAAGCAGCTCTTGTTCACCGGC    520
                           .|.|||.||.||||||||.||.|||...||..|.||.||.||||
BPUM_0018___y    477 ------TACGCTTCTGAAGCAAGGAGGGAAACTGGCAATGGTCCATCGGC    520

BSNT_00068___    521 CGGGAAGGCTTCTGGAGATTTTTGAACTGATGAAGGCTTATCAAATCGAG    570
                     |||||.||||.||.||||||.|.|||.|.||||||...||.|.|||.|||
BPUM_0018___y    521 CGGGACGGCTGCTTGAGATTGTGGAATTAATGAAGAAGTACCGAATTGAG    570

BSNT_00068___    571 CCAAAACGTGTACAATTTGTCTATCCGAAGCAAGGGAAAGAAGCCAATAC    620
                     ||||||||..|.||||||||.|||||.||.||.||.|||||.||||||||
BPUM_0018___y    571 CCAAAACGAATTCAATTTGTTTATCCCAAACAGGGCAAAGAGGCCAATAC    620

BSNT_00068___    621 CATTTTGGTTGAAGGTATCAAAGGCGGGCGTCCGGATTTAAAAATTCTTC    670
                     |||.||.||.||.||.||.||||..||....||.|||.|.||||||||.|
BPUM_0018___y    621 CATCTTAGTAGAGGGGATAAAAGATGGAAAACCAGATCTGAAAATTCTCC    670

BSNT_00068___    671 CTCCTTTATTCGTTTAT---GATGAACAAAATGAATATACAAAAGAAATC    717
                     |.|||.|.||.||||||   |||||.|||   ||.||||||.|.||||||
BPUM_0018___y    671 CGCCTCTTTTTGTTTATGGAGATGATCAA---GAGTATACAGAGGAAATC    717

BSNT_00068___    718 AGGACCATTTTATATGGAGACAAATAA    744
                     |||||.||..|.||||||||...||||
BPUM_0018___y    718 AGGACGATACTGTATGGAGAAGCATAA    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00068 and BPUM_0018

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
