Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00061 and BPUM_0013

See Amino acid alignment / Visit BSNT_00061 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00061___yaaQ.1.24716.seq
#    -bsequence dna-align/BPUM_0013___yaaQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00061___yaaQ-BPUM_0013___yaaQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00061___yaaQ-BPUM_0013___yaaQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00061___yaaQ
# 2: BPUM_0013___yaaQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     255/339 (75.2%)
# Similarity:   255/339 (75.2%)
# Gaps:          18/339 ( 5.3%)
# Score: 888.0
# 
#
#=======================================

BSNT_00061___      1 ATGAAATTGATAGTGGCAGTTGTACAAGATCAGGACAGCAACAGACTT-T     49
                     ||||||||.||.||.||.||||||||.||.||.||.||.|.|| |.|| |
BPUM_0013___y      1 ATGAAATTAATTGTTGCCGTTGTACAGGACCAAGATAGTAGCA-AGTTGT     49

BSNT_00061___     50 TGAAAACCTTAACGGATCA-CAACTTCAGAGTCACAA----AGCTTGCGA     94
                     ||||||..||.||.||.|| ||| |||.|.||.||||    |||||    
BPUM_0013___y     50 TGAAAATATTGACTGAACATCAA-TTCGGCGTGACAAAATTAGCTT----     94

BSNT_00061___     95 CGACAGGAGGATTTCTTAAA-TCAGGCAATACAACGTTTATGATCGG-TG    142
                     |.||.||.||.||| ||||| ||.||.|||||.||.|||||.||.|| ||
BPUM_0013___y     95 CAACTGGTGGGTTT-TTAAAGTCTGGGAATACGACTTTTATCATTGGTTG    143

BSNT_00061___    143 TCGAGGATATACGCGTCAATAAAGCGTTG-AGTCTCATTAAAGAAAACGG    191
                     | ||.|||.|.||.||..||||||||||| || ||.||.||||||||..|
BPUM_0013___y    144 T-GATGATGTCCGAGTGGATAAAGCGTTGCAG-CTTATAAAAGAAAATTG    191

BSNT_00061___    192 GCAGAAACGTGATCAGATGATTGCCCCTGTATCTCCAATGGGCGGAAATG    241
                     .|..|||||||||||.||||||||.|||||||||||||||||.||.||.|
BPUM_0013___y    192 CCGCAAACGTGATCAAATGATTGCACCTGTATCTCCAATGGGTGGTAACG    241

BSNT_00061___    242 CTGATTCCTATGTCCCTTATCCAGTCGAAGTTGAAGTTGGCGGAGCGACA    291
                     |.|||||.|||||.||.||.||.||.||.|||||||||||.|||||.||.
BPUM_0013___y    242 CAGATTCATATGTACCATACCCTGTTGAGGTTGAAGTTGGTGGAGCTACT    291

BSNT_00061___    292 GTATTTGTCCTTCCAGTCGATGAATTTCATCAATTTTAA    330
                     ||.|||.|.||.|||||.||..|||||||||||||.|||
BPUM_0013___y    292 GTCTTTATTCTGCCAGTTGAACAATTTCATCAATTCTAA    330


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