Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00058 and BPUM_0010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:59
# Commandline: needle
# -asequence dna-align/BSNT_00058___yaaN.1.24716.seq
# -bsequence dna-align/BPUM_0010___yaaN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00058___yaaN-BPUM_0010___yaaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00058___yaaN-BPUM_0010___yaaN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00058___yaaN
# 2: BPUM_0010___yaaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity: 545/1310 (41.6%)
# Similarity: 545/1310 (41.6%)
# Gaps: 592/1310 (45.2%)
# Score: 1217.0
#
#
#=======================================
BSNT_00058___ 1 ATGAACCGAGACCAAAGCGACCTTCATATAGATGAATTATTGGCAGATCC 50
BPUM_0010___y 0 -------------------------------------------------- 0
BSNT_00058___ 51 TTTTGGTGGTAACATAGAGATACCAGGTTCGGAGGCTGTAAAAGCAGAGA 100
BPUM_0010___y 0 -------------------------------------------------- 0
BSNT_00058___ 101 AAGAGCAAGTACGGCTTGTTGATGTTCTTCCTGAGGAAAACAAGGAAAAA 150
BPUM_0010___y 0 -------------------------------------------------- 0
BSNT_00058___ 151 GCAATTCAGCTTGCTGGACAGATTGATCATAAAAATATGCAAAGCATTGT 200
BPUM_0010___y 0 -------------------------------------------------- 0
BSNT_00058___ 201 CTTATACGGTTCACAAGCTCAATCTAAACTGCTGAACTTTTCTCATGATA 250
|
BPUM_0010___y 1 -------------------------------------------------A 1
BSNT_00058___ 251 TGATTAATCATGTTCAAAAGAAGGATGTCGGGGAGATTGGCGAAATACTT 300
||||.||..|||||.|.||.||.|||.|| ||| .|||||
BPUM_0010___y 2 TGATGAAATATGTTGAGAAAAAAGATATC-----GAT----CAAATA--- 39
BSNT_00058___ 301 GGAGA---GCTGATGAAAAAGC-----TGGAGCA---------AGTAAAT 333
||||| ||| || |.|| ||.|||| |||..|.
BPUM_0010___y 40 GGAGACGTGCT--TG---AGGCCTTTTTGCAGCAGTTACATGTAGTGGAG 84
BSNT_00058___ 334 CCTGATGATCT----CCAATCTAAGAAAAAGGGTATTTTGGCACGCATGT 379
||.||.|||.| | |.||||||.||||..|||| |
BPUM_0010___y 85 CCAGAGGATTTGGTGC----CGAAGAAACAGGGCTTTTT----------T 120
BSNT_00058___ 380 TTGGAAGAGTATCAA----------GTTCTCTTCAAGAG----------G 409
|||.||..||.|||| |.|||..|||.||| |
BPUM_0010___y 121 TTGAAATGGTTTCAACGCGATAAGCGATCTACTCAGGAGACCATATCACG 170
BSNT_00058___ 410 TGCTGTCTAAATACCAAAAGACCAGTGTGCAGATAGACAGA--ATCAGCT 457
| |.||.|.||.|.|||..| |||||.||.||| .|||||
BPUM_0010___y 171 T--TTTCGACATGCAAAATCA--------CAGATCGAGAGATTGTCAGC- 209
BSNT_00058___ 458 TGAA-GCTGGAGCACTCTAAAAATGC---------TTTAATCAGTGACAA 497
|| ||| |.||.|||| .||||||...|||.|
BPUM_0010___y 210 --AAGGCT---------TCAATATGCAAGAGGCGTATTAATCTCGGACCA 248
BSNT_00058___ 498 CAAGCTGTTAGAGCAGTTATATGAAAAAAATAAAGAATATTTTGCC--GC 545
.|.|.|.|||||||..||||.||||.|||||.||...||||| || |.
BPUM_0010___y 249 TATGTTATTAGAGCGTTTATTTGAAGAAAATCAAACGTATTT--CCAAGA 296
BSNT_00058___ 546 GCTGAATGTTTATATTGCTGCAGGAGAACTGAAGCTGGAGGAATTAAAAA 595
|.||| .||||||| |.||.||.|.||.||.|
BPUM_0010___y 297 GATGA----------CGCTGCAG----------GTTGCAGCAGTTGAAGA 326
BSNT_00058___ 596 CGAAAACAATTCC-TGAACTGA-AGCAACAGGCT------GAATCGAGTG 637
|||||.|| || || |.| ||||.|||.|| |||.||
BPUM_0010___y 327 -GAAAATAA--CCATG---TTAGAGCAGCAGCCTCTTTCAGAAACG---- 366
BSNT_00058___ 638 ATCATAACCAAAT-----------GGCCGTTCAAGAGG------TGAATG 670
||||| ||.|||| ||||| || |||
BPUM_0010___y 367 --------CAAATTTCTGTTGAACGGACGTT--AGAGGAGCAATTG-ATG 405
BSNT_00058___ 671 ATT---TAATTCAAT-TTGCTGA----CCGGTTAGATAAAAGG------- 705
|.| .||.||||| |.|..|| ..||..|||..|||||
BPUM_0010___y 406 AGTCAAGAAGTCAATGTAGAAGAGTATATGGAGAGACTAAAGGAACGAAA 455
BSNT_00058___ 706 GTGCATGATTTGTTGCTGAGCAGGCAAGTTACAATTCAAAGTGCACCGCA 755
|| ||||||||.||.|.|||.||||..||.||.|.|||.||....|.||
BPUM_0010___y 456 GT--ATGATTTGCTGTTAAGCCGGCAGATTGCATTGCAATGTAATGCTCA 503
BSNT_00058___ 756 AATCAGGCTGATTCAAAATACAAACCAAGCGTTAGCTGAAAAGATTCAGT 805
|||..||.||||.||..||||.||.||..|.||.|||.|..|.|||||
BPUM_0010___y 504 AATTCGGATGATCCAGCATACGAATCATACATTGGCTAATCACATTCA-- 551
BSNT_00058___ 806 CATCCATTGTGACAG---CGATTCCGTTATGGAAAAATCAAGTTGCCATT 852
|||.|..||..||| |.|||||..||||||..||.|||.|..|.|||
BPUM_0010___y 552 -ATCAACAGTTTCAGCCTCTATTCCTCTATGGATCAACCAAATGTCGATT 600
BSNT_00058___ 853 GCGCTGACGCTTTTAAGGCAGCG---CAATGCAGTGGATGCACAACAGAA 899
||..|.||||.|.||..|||||| ||||.|| ||.|.|.|||
BPUM_0010___y 601 GCATTAACGCATATACAGCAGCGGGCCAATTCA------GCTCTAGAGA- 643
BSNT_00058___ 900 AGTATCTGATACAACCAATGAGCTTTTGCTGAAAAATGCGGAGCTTTTAA 949
||.||| ||.||
BPUM_0010___y 644 ---------------------------GCCGAA------------TTCAA 654
BSNT_00058___ 950 AAACCA-ATACAATTG-----AAACTGCACGGGCAAA----TGAAAGAGG 989
|||.|| ||..||.|| ||.|.|||.|||||.| || ||||||
BPUM_0010___y 655 AAAACATATGAAAATGTATCAAAGCAGCAGGGGCAGATTCTTG-AAGAGG 703
BSNT_00058___ 990 C--CTTGTTGATA-------TAGATACCTTGAAGAAGGTGCAGGAAAGCT 1030
| ||| || |||||||.|||||..||||.| ||..|
BPUM_0010___y 704 CATCTT-----TATCCCCTGTAGATACATTGAAACAGGTTC----AACGT 744
BSNT_00058___ 1031 TAATAAGCACGCTTGAAGAAACACTGACTATACAAGAA-----------G 1069
.|||.||| |||| ||..||||.||| |
BPUM_0010___y 745 CAATTAGC-----TGAA---------ACATTACAGGAAACGTTACAGGTG 780
BSNT_00058___ 1070 AAGGACGAATCAAACGCCGTCAGGCAGAAGAA-GAGCTCA--TG------ 1110
||.|| |.||..|| ||| ||||| |.||||| ||
BPUM_0010___y 781 AAAGA-GCATGGAA-GCC---------AAGAACGGGCTCAATTGAAAAAC 819
BSNT_00058___ 1111 ---ATG-ATGGAAGGC-GACCTGAA----GCAAAAGCTGCTTACAATAAA 1151
||| ||| |||| ||.|.|.| ||||| |.|||||||
BPUM_0010___y 820 AGTATGTATG--AGGCAGAGCAGCAGTTGGCAAA-------TCCAATAAA 860
BSNT_00058___ 1152 GGAAAGATAG 1161
||||.||
BPUM_0010___y 861 GGAATGA--- 867
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