Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00056 and BPUM_0008
See
Amino acid alignment /
Visit
BSNT_00056 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:59
# Commandline: needle
# -asequence dna-align/BSNT_00056___csfB.1.24716.seq
# -bsequence dna-align/BPUM_0008___csfB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00056___csfB-BPUM_0008___csfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00056___csfB-BPUM_0008___csfB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00056___csfB
# 2: BPUM_0008___csfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 213
# Identity: 134/213 (62.9%)
# Similarity: 134/213 (62.9%)
# Gaps: 39/213 (18.3%)
# Score: 414.5
#
#
#=======================================
BSNT_00056___ 1 ATGGACGAAACAG------------TTAAACTTAATCATACATGTGTGAT 38
||||||.|||.|| || |||.||||
BPUM_0008___c 1 ATGGACAAAAAAGAGCGAGAAGCGATT---------------TGTTTGAT 35
BSNT_00056___ 39 TTGTGATCAAGAG---AAGAATAGAGGCATTCATCTTTATACGA--AATT 83
||||| ||||| ||||..|.|||.||| |.||||||..| |.||
BPUM_0008___c 36 TTGTG---AAGAGAAAAAGACAAAAGGAATT--TATTTATATCATCAGTT 80
BSNT_00056___ 84 CATATGCTTAGATTGTGAGAGAAAAGTAATTTCTACATCAACTTCTGATC 133
..|.|||..|||.||||||.||||..||||.||||||||.||.||.||||
BPUM_0008___c 81 TTTGTGCCGAGACTGTGAGCGAAAGTTAATATCTACATCGACCTCGGATC 130
BSNT_00056___ 134 CTGACTATGCGTTTTACGTAAAAAAAC-TAAAGAGCATTCATACACCGCC 182
||..||||.|....||.||.|.|||.| ||||.|.| |||||||.|||||
BPUM_0008___c 131 CTAGCTATTCCGACTATGTGAGAAAGCTTAAAAATC-TTCATACGCCGCC 179
BSNT_00056___ 183 ATTATATTCATAG 195
.||.|||||||||
BPUM_0008___c 180 TTTGTATTCATAG 192
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.