Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00005 and BPUM_0005

See Amino acid alignment / Visit BSNT_00005 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:56
# Commandline: needle
#    -asequence dna-align/BSNT_00005.1.24716.seq
#    -bsequence dna-align/BPUM_0005___yaaB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00005-BPUM_0005___yaaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00005-BPUM_0005___yaaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00005
# 2: BPUM_0005___yaaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 275
# Identity:     183/275 (66.5%)
# Similarity:   183/275 (66.5%)
# Gaps:          49/275 (17.8%)
# Score: 619.0
# 
#
#=======================================

BSNT_00005         1 ---------TTGTATATTCATTTAGGTGATGACTTTGTGGTTTCAACACG     41
                              |||||||||||||||||||||||.|.|||.|||||.|||||
BPUM_0005___y      1 GTGTGGGTCTTGTATATTCATTTAGGTGATGATTGTGTTGTTTCTACACG     50

BSNT_00005        42 AGATATTGTCGGCATTTTTGACTTTAAAGCCAACAT------GTCGCCTA     85
                     |||.|||||||..|||.||||  |||    |||.||      |||..||.
BPUM_0005___y     51 AGAGATTGTCGCAATTGTTGA--TTA----CAAAATGAGGTCGTCTTCTG     94

BSNT_00005        86 TTGTTGAAGAATTTCTGAAAAAAC-AGAAACACAAGGTGGTGCCTTCCGT    134
                     ||||.|||||.|||||..|||||| ||||..||||     ..|.||.|||
BPUM_0005___y     95 TTGTAGAAGAGTTTCTTCAAAAACAAGAAGGACAA-----ATCATTTCGT    139

BSNT_00005       135 ----AAACGGCACGCCCAAATCTATCGTAGTCACGGTTCAGAA-------    173
                         |.|.||.||.||||||||.|||||.|||||       ||       
BPUM_0005___y    140 TATCACAAGGGACACCCAAATCCATCGTCGTCAC-------AACTAAATC    182

BSNT_00005       174 TATATATTACTCTCC-CTTATCTTCCAGCACATTAAAAAAACGTGCGCAA    222
                     |.|.||||||||||| ||| ||.||.|||||..|.|||||||||||...|
BPUM_0005___y    183 TGTTTATTACTCTCCTCTT-TCCTCAAGCACGCTCAAAAAACGTGCTTCA    231

BSNT_00005       223 TTTATGTTTGAAATAG-ATTCTTAG    246
                     |||.||.|||||||.| |.|||.| 
BPUM_0005___y    232 TTTGTGATTGAAATTGAAGTCTAA-    255


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