Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00004 and BPUM_0004
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:56
# Commandline: needle
# -asequence dna-align/BSNT_00004___recF.1.24716.seq
# -bsequence dna-align/BPUM_0004___recF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00004___recF-BPUM_0004___recF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00004___recF-BPUM_0004___recF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00004___recF
# 2: BPUM_0004___recF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1133
# Identity: 845/1133 (74.6%)
# Similarity: 845/1133 (74.6%)
# Gaps: 40/1133 ( 3.5%)
# Score: 3080.0
#
#
#=======================================
BSNT_00004___ 1 TTGTATATCCAGAACTTAG-----AACTTTCATCTTACCGCAACTACGAC 45
.||||.||.|| ||.|..| |||| ||.|||||.|||||.||.
BPUM_0004___r 1 ATGTACATTCA-AAGTCTGGCGTTAACT----TCATACCGAAACTATGAA 45
BSNT_00004___ 46 CATGCTGAACTTCAATTTGAAAATAAAGTAAATGTGATCATCGGAGAAAA 95
||..|.||.||||||||.||.||.||.||.|||||.||.|||||.||.||
BPUM_0004___r 46 CACACCGAGCTTCAATTCGACAACAAGGTGAATGTCATGATCGGTGAGAA 95
BSNT_00004___ 96 CGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGG 145
.|||||.||.||.||.|||.|.|||||.|||||||||||.|||||.||||
BPUM_0004___r 96 TGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGG 145
BSNT_00004___ 146 CGAAATCGCACCGGACATCAAATGACAAAGAACTTATACGGTGGGACAAA 195
|.||.|||||.||.||.||||||||.|||||||||||.||.||||||.||
BPUM_0004___r 146 CAAAGTCGCATCGTACGTCAAATGATAAAGAACTTATCCGATGGGACCAA 195
BSNT_00004___ 196 GACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCGATCCC 245
|||||||||||||||||.||.|||||.||.||..||||.||..|..||||
BPUM_0004___r 196 GACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCACTCCC 245
BSNT_00004___ 246 GATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATA 295
.|||||.|||||.||.||.|||||.||.||||||||||||||||||||.|
BPUM_0004___r 246 AATGCAACTCGTGATTTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACA 295
BSNT_00004___ 296 TTGAACAGCAAAAGCTCAGCCAGTATGTCGGGGCCCTCAACACCATTATG 345
|||||||.||.||||||||.||.|||||.||.||.||.||||||||.|||
BPUM_0004___r 296 TTGAACAACAGAAGCTCAGTCATTATGTTGGTGCGCTAAACACCATCATG 345
BSNT_00004___ 346 TTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAG 395
||.||.||.||.||.||||.||||||||||||.|||||.|||.|..|.||
BPUM_0004___r 346 TTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCAG 395
BSNT_00004___ 396 GCGGTTTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTT-CAT 444
..|.||.||.||.|||||.||||||||.||||||.|.||||| ||| |||
BPUM_0004___r 396 AAGATTCCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTA-CTTGCAT 444
BSNT_00004___ 445 GATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGGAATCATTTTTTGAA 494
|||.|.||.||.||.||.|||||.||.||.|||||||||||||..|||||
BPUM_0004___r 445 GATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGGAATCATTACTTGAA 494
BSNT_00004___ 495 ACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGA 544
|||..||||.||.|||||.|||||.||.|...|||||||.||.|||.|.|
BPUM_0004___r 495 ACAATTGCAGACTAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAA 544
BSNT_00004___ 545 CCGATCAGCTTATAGAAGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAG 594
|.||.||..|.||.||.|..|||||.||.||.|||..||.|||.|||...
BPUM_0004___r 545 CAGAGCAATTGATTGATGCGGCAGCGAAGGTTGTCAAAAGACGACTGACT 594
BSNT_00004___ 595 TTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCATCTC 644
|||||...|||||||||.||||||||||||||..|.|||...|||||.||
BPUM_0004___r 595 TTTACGAAACAGCTCGAAAAATGGGCGCAGCCGTTGCATTTTGGCATTTC 644
BSNT_00004___ 645 AAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTAT 694
.||||.|||.|||..|||.||.||..|||||||.||.||..|.||.||||
BPUM_0004___r 645 TAGAGAGCTAGAAACACTCACGCTCCAATACCACACGGCGATAGAGGTAT 694
BSNT_00004___ 695 CAGA----TCCCCTAGATTTGTCGAAAATAGGAG-ATAGCTATCAAGAAG 739
|||| || |||.|||||||||||| .|| ||||||||.|||||.
BPUM_0004___r 695 CAGAAGCGTC----AGACTTGTCGAAAATA-AAGAATAGCTATGAAGAAT 739
BSNT_00004___ 740 CGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCA 789
|||||...|||.|||||||.|.||||||.||.||.||.||||||||||..
BPUM_0004___r 740 CGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGCTGTGG 789
BSNT_00004___ 790 GGGCCTCATCGCGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCA 839
||.|||||..|.|||||..|.|||||||.||||||.||.||.|||||.||
BPUM_0004___r 790 GGACCTCACAGAGATGACCTACTTTTCTTTGTGAATGGTCGGGATGTTCA 839
BSNT_00004___ 840 GACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGTCCCTTAAGC 889
|||.|||||.||||||||.||.||..||||.||.||..|.||.|||||||
BPUM_0004___r 840 GACATATGGCTCTCAAGGGCAACAAAGAACAACAGCTCTATCACTTAAGC 889
BSNT_00004___ 890 TGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTA 939
||||.||.||.|||.||||.|||||||||||||||||||||||||||.|.
BPUM_0004___r 890 TGGCAGAAATCGACTTGATACATGAAGAAATCGGAGAATATCCCATTCTT 939
BSNT_00004___ 940 CTATTGGATGATGTACTGAGTGAACTGGATGATTATCGCCAGTCACACTT 989
.||.|.||||||||..|...||||||.||||||||..|.|||||.||.||
BPUM_0004___r 940 TTACTCGATGATGTTTTATCTGAACTTGATGATTACAGACAGTCTCATTT 989
BSNT_00004___ 990 GCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCG 1039
|||.|||||.||.||.||.||||||||.||.||.|||||.||.|||||.|
BPUM_0004___r 990 GCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACTACAACAAGTG 1039
BSNT_00004___ 1040 TTGATGGCATTGATCACGAAACCTT--ACGTCAAGCAGGAATGTTC---- 1083
||||.|||||.|||||||..||||| |.| ||||.|.|||.|||
BPUM_0004___r 1040 TTGAAGGCATCGATCACGCCACCTTGAAAG--AAGCGGAAATTTTCAGAG 1087
BSNT_00004___ 1084 ---CGTGTGCAAAATGGTGCGTTAGTGAAGTGA 1113
|..|||.|||| ||.|.|| |.|||
BPUM_0004___r 1088 TAGCCAGTGGAAAA------GTAATTG-ACTGA 1113
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