Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00003 and BPUM_0003
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:56
# Commandline: needle
# -asequence dna-align/BSNT_00003___yaaA.1.24716.seq
# -bsequence dna-align/BPUM_0003___yaaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00003___yaaA-BPUM_0003___yaaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00003___yaaA-BPUM_0003___yaaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00003___yaaA
# 2: BPUM_0003___yaaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity: 160/240 (66.7%)
# Similarity: 160/240 (66.7%)
# Gaps: 24/240 (10.0%)
# Score: 576.0
#
#
#=======================================
BSNT_00003___ 1 ------------------------ATGGCAAATCCGATTTCAATTGATAC 26
|||.|.||.||.||..|.|||||.|.
BPUM_0003___y 1 GTGATATTGAAAGAGGTCGATATAATGCCTAACCCTATAACCATTGAGAA 50
BSNT_00003___ 27 AGAGATGATTACACTCGGACAATTCTTAAAATTAGCCGATGTGATTCAGT 76
|||.|||||||||.|.||.|||||.||.|||||||||||.||.||.||.|
BPUM_0003___y 51 AGAAATGATTACATTAGGGCAATTTTTGAAATTAGCCGAAGTCATCCAAT 100
BSNT_00003___ 77 CTGGCGGTATGGCGAAGTGGTTTTTAAGCGAGCATGAAGTGCTTGTGAAC 126
|||||||.||||||||.||||||||.||.||.|||||.|||.|..|.||.
BPUM_0003___y 101 CTGGCGGAATGGCGAAATGGTTTTTGAGTGAACATGAGGTGTTCATTAAT 150
BSNT_00003___ 127 GATGAGCCGGACAACCGCCGGGGCAGAAAGCTGTATGTTGGAGATGTGGT 176
.|.|||||.||.||..|.|||||..|.||.||.||....||||||||.||
BPUM_0003___y 151 CAAGAGCCAGATAATAGACGGGGACGCAAACTATACCCAGGAGATGTTGT 200
BSNT_00003___ 177 AGAGATTGAAGGATTTGGTTCATTTCAAGTCGTCAATTAA 216
.|||||.|||||.|.|||..||||||||||.||.|||||.
BPUM_0003___y 201 CGAGATAGAAGGTTATGGCACATTTCAAGTTGTGAATTAG 240
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