Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00003 and BPUM_0003

See Amino acid alignment / Visit BSNT_00003 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:56
# Commandline: needle
#    -asequence dna-align/BSNT_00003___yaaA.1.24716.seq
#    -bsequence dna-align/BPUM_0003___yaaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00003___yaaA-BPUM_0003___yaaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00003___yaaA-BPUM_0003___yaaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00003___yaaA
# 2: BPUM_0003___yaaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity:     160/240 (66.7%)
# Similarity:   160/240 (66.7%)
# Gaps:          24/240 (10.0%)
# Score: 576.0
# 
#
#=======================================

BSNT_00003___      1 ------------------------ATGGCAAATCCGATTTCAATTGATAC     26
                                             |||.|.||.||.||..|.|||||.|.
BPUM_0003___y      1 GTGATATTGAAAGAGGTCGATATAATGCCTAACCCTATAACCATTGAGAA     50

BSNT_00003___     27 AGAGATGATTACACTCGGACAATTCTTAAAATTAGCCGATGTGATTCAGT     76
                     |||.|||||||||.|.||.|||||.||.|||||||||||.||.||.||.|
BPUM_0003___y     51 AGAAATGATTACATTAGGGCAATTTTTGAAATTAGCCGAAGTCATCCAAT    100

BSNT_00003___     77 CTGGCGGTATGGCGAAGTGGTTTTTAAGCGAGCATGAAGTGCTTGTGAAC    126
                     |||||||.||||||||.||||||||.||.||.|||||.|||.|..|.||.
BPUM_0003___y    101 CTGGCGGAATGGCGAAATGGTTTTTGAGTGAACATGAGGTGTTCATTAAT    150

BSNT_00003___    127 GATGAGCCGGACAACCGCCGGGGCAGAAAGCTGTATGTTGGAGATGTGGT    176
                     .|.|||||.||.||..|.|||||..|.||.||.||....||||||||.||
BPUM_0003___y    151 CAAGAGCCAGATAATAGACGGGGACGCAAACTATACCCAGGAGATGTTGT    200

BSNT_00003___    177 AGAGATTGAAGGATTTGGTTCATTTCAAGTCGTCAATTAA    216
                     .|||||.|||||.|.|||..||||||||||.||.|||||.
BPUM_0003___y    201 CGAGATAGAAGGTTATGGCACATTTCAAGTTGTGAATTAG    240


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