Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00002 and BPUM_0002
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:56
# Commandline: needle
# -asequence dna-align/BSNT_00002___dnaN.1.24716.seq
# -bsequence dna-align/BPUM_0002___dnaN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00002___dnaN-BPUM_0002___dnaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00002___dnaN-BPUM_0002___dnaN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00002___dnaN
# 2: BPUM_0002___dnaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1283
# Identity: 908/1283 (70.8%)
# Similarity: 908/1283 (70.8%)
# Gaps: 163/1283 (12.7%)
# Score: 3513.5
#
#
#=======================================
BSNT_00002___ 0 -------------------------------------------------- 0
BPUM_0002___d 1 ATGTGGATAGGCTGTCTTTCCTTTCTTTTTACCGACTTATCCACATATTC 50
BSNT_00002___ 0 -------------------------------------------------- 0
BPUM_0002___d 51 ACAAGCCCTACTATTACTTCTACGATTTTTATTAATAAAATATATATACA 100
BSNT_00002___ 1 -----------------------------ATGAAATTCACGATTCAAAAA 21
|||||||||||||||||||||
BPUM_0002___d 101 TGTCATTAAGAAAATTTAGGAGGACCACTATGAAATTCACGATTCAAAAA 150
BSNT_00002___ 22 GATCGTCTTGTTGAAAGTGTCCAAGATGTATTAAAAGCAGTTTCATCCAG 71
|||||||||||.|||||||||||||||||||||||.||.||.||.||.||
BPUM_0002___d 151 GATCGTCTTGTCGAAAGTGTCCAAGATGTATTAAAGGCCGTATCCTCTAG 200
BSNT_00002___ 72 AACCACGATTCCCATTCTGACTGGTATTAAAATTGTTGCATCAGATGATG 121
|||.|||||.||.|||.||||.||.||.||||||||||||||.|||||.|
BPUM_0002___d 201 AACAACGATACCTATTTTGACAGGGATAAAAATTGTTGCATCTGATGAGG 250
BSNT_00002___ 122 GAGTATCCTTTACAGGGAGTGACTCAGATATTTCTATTGAATCCTTCATT 171
|.||.||..|.|||||.||||||||.|||||.||.|||||||||||.|||
BPUM_0002___d 251 GGGTTTCTCTCACAGGAAGTGACTCTGATATCTCAATTGAATCCTTTATT 300
BSNT_00002___ 172 CC-AAAAGAAGAAGGAGATAAAGAAATCGTCACTATTGAACAGCCCGGAA 220
|| .|||| |||.||||||..||||.|..|.||.|||||.|..||.||||
BPUM_0002___d 301 CCTCAAAG-AGATGGAGATTTAGAAGTAATTACGATTGATCGTCCAGGAA 349
BSNT_00002___ 221 GCATCGTTTTACAGGCTCGCTTTTTTAGTGAAATTGTAAAAAAATTGCCG 270
|.||.||..|.|||||||||||.||||||||||||||.||.|||.||||.
BPUM_0002___d 350 GTATTGTGCTTCAGGCTCGCTTCTTTAGTGAAATTGTGAAGAAACTGCCA 399
BSNT_00002___ 271 ATGGCAACTGTAGAAATTGAAGT---CCAAAATCAGTATTTGACGATTAT 317
|||||.|||||.||||||||||| .||||||| |..|.||.||.||
BPUM_0002___d 400 ATGGCTACTGTCGAAATTGAAGTAGAACAAAATC---ACCTCACCATCAT 446
BSNT_00002___ 318 CCGTTCTGGTAAAGCTGAATTTAATCTAAACGGACTGGATGCTGACGAGT 367
.|||||||||..|||.||||||||..|||||||..|.||||||||.||||
BPUM_0002___d 447 TCGTTCTGGTTCAGCAGAATTTAACTTAAACGGCTTAGATGCTGAAGAGT 496
BSNT_00002___ 368 ATCCGCA-CTTGCCGCAGATTGAAGAGCATCATGCGATTCAGATCCCAAC 416
||||||| ||| |||||.|||||||||||||||||..||||.||.|||||
BPUM_0002___d 497 ATCCGCATCTT-CCGCAAATTGAAGAGCATCATGCATTTCAAATTCCAAC 545
BSNT_00002___ 417 TGATTTG-TTAAAAAATCTAATCAGACAAACAGTATTTGCAGTGTCCACC 465
.|||.|| |||||||.| ||||..|.|||||.||.|||||||||||||||
BPUM_0002___d 546 AGATCTGCTTAAAAACT-TAATTCGTCAAACTGTTTTTGCAGTGTCCACC 594
BSNT_00002___ 466 TCAGAAACACGCCCTATCTTGACAGGTGTAAACTGGAAAGTGGAGCAAAG 515
|||||||||||.||||||||||||||||||||||||||.|||||..||.|
BPUM_0002___d 595 TCAGAAACACGACCTATCTTGACAGGTGTAAACTGGAAGGTGGAAAAAGG 644
BSNT_00002___ 516 TGAATTATTATGCACTGCAACGGATAGCCACCGTCTTGCATTAAGAAAGG 565
|||||||.|||||||.||.||.|||||||||||||||||.||||||||.|
BPUM_0002___d 645 TGAATTAATATGCACAGCGACCGATAGCCACCGTCTTGCTTTAAGAAAAG 694
BSNT_00002___ 566 CCAAACTTGATATTCCAGAAGACAGATCTTATAACGTCGTGATTCCGGGA 615
|.||..|.||||||...||.||.||.||.||.||.|||||.|||||.||.
BPUM_0002___d 695 CGAAGTTGGATATTGACGAGGAAAGCTCATACAATGTCGTCATTCCAGGG 744
BSNT_00002___ 616 AAAAGTTTAACTGAACTCAGCAAGATTTTAGATGA----CAACCAGGAAC 661
||.||||||||.||.||.||.|..||..|.||||| ||| ||.|
BPUM_0002___d 745 AAGAGTTTAACAGAGCTAAGTAGAATCCTTGATGATGGGCAA----GATC 790
BSNT_00002___ 662 TTGTAGA-TATCGTCATCACAGAAACCCAAGTTCTGTTTAAAGCGAAAAA 710
|||| || .|||||.||.||||||||.||||||||.||||||||..||||
BPUM_0002___d 791 TTGT-GAGCATCGTGATTACAGAAACTCAAGTTCTCTTTAAAGCACAAAA 839
BSNT_00002___ 711 CGTCTTATTCTTCTCACGGCTTCTGGACGGGAATTATCCAGACACAACCA 760
|||.||.|||||||||.|..|.|||||.||||||||||||||.|||.|..
BPUM_0002___d 840 CGTGTTGTTCTTCTCAAGATTGCTGGATGGGAATTATCCAGATACAGCTC 889
BSNT_00002___ 761 GCCTGATTCCGCAAGACAGCAAAACAGAAATCATTGTGAACACAAAAGAA 810
|||||||.|||||.||.||.|||||.||..|..|.||.||||||||.|||
BPUM_0002___d 890 GCCTGATCCCGCAGGAAAGTAAAACGGATGTTGTGGTCAACACAAAGGAA 939
BSNT_00002___ 811 TTCCTTCAGGCCATTGATCGTGCATCTCTTTTAGCTAGAGAGGGACGCAA 860
||||||||.|||||||||||||||||.|||||.||.|||||.||||||||
BPUM_0002___d 940 TTCCTTCAAGCCATTGATCGTGCATCACTTTTGGCAAGAGAAGGACGCAA 989
BSNT_00002___ 861 CAACGTTGTAAAACTGTCCGCAAAACCGGCTGAATCCA-----TTGAAAT 905
.||.||.|||||.|||||.||..|.| ||||| || ||||.||
BPUM_0002___d 990 TAATGTCGTAAAGCTGTCAGCTGATC---CTGAA--CAAAGCCTTGAGAT 1034
BSNT_00002___ 906 TTCTTCCAATTCACCGGAAATCGGTAAAGTTGTGGAAGCAATTGCTGCGG 955
||||||.||||||||.||||||||||||||.||.|||.|..||...||.|
BPUM_0002___d 1035 TTCTTCTAATTCACCTGAAATCGGTAAAGTAGTCGAAACGGTTCAAGCAG 1084
BSNT_00002___ 956 ATCAAATTGAAGGTGAGGA-ATTAAATATCTCTTTTAGTCCAAAATATAT 1004
||.|.|||.||||.||||| .||||| |||||.|||||||||||||||||
BPUM_0002___d 1085 ATGACATTAAAGGGGAGGACCTTAAA-ATCTCCTTTAGTCCAAAATATAT 1133
BSNT_00002___ 1005 GCTGGATGCACTAAAGGTGCTTGAAGGAGCAGAAATACGCGTAAGCTTTA 1054
|||.|||||..||||.||..|.||.|||.||||.||.|..|||||.||||
BPUM_0002___d 1134 GCTAGATGCGTTAAAAGTATTAGAGGGAACAGAGATTCATGTAAGTTTTA 1183
BSNT_00002___ 1055 CAGGTGCAATGAGACCTTTCTTAATTCGCACGCCGAATGATGAAACGATT 1104
|.|||||.||||||||.|||.|..|.||||||||.||||||||..|.||.
BPUM_0002___d 1184 CTGGTGCTATGAGACCGTTCCTGTTGCGCACGCCAAATGATGATTCAATC 1233
BSNT_00002___ 1105 GTACAGCTTATCCTCCCTGTCAGAACCTATTAA 1137
.|.|||.|.||.||.||.||||||||.||||||
BPUM_0002___d 1234 TTGCAGTTGATTCTTCCAGTCAGAACATATTAA 1266
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