Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06219 and BL05396
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:11
# Commandline: needle
# -asequence dna-align/BSNT_06219___yycB.1.5803.seq
# -bsequence dna-align/BL05396___yycB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06219___yycB-BL05396___yycB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06219___yycB-BL05396___yycB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06219___yycB
# 2: BL05396___yycB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1301
# Identity: 816/1301 (62.7%)
# Similarity: 816/1301 (62.7%)
# Gaps: 187/1301 (14.4%)
# Score: 2343.5
#
#
#=======================================
BSNT_06219___ 1 ----------TTGCCACATC------CACATAATAAAAAAATCCAATCAT 34
|||.|.| || |.|.|...||.||.||| |
BL05396___yyc 1 ATGCATTACATTGACGC-TCGACGCGCCCGTTTGAACAATATC------T 43
BSNT_06219___ 35 TTTGGCTGATCACCGGCATTATCTTTATCGCCTTTAACTTACGGCCCGCG 84
||| ||||..|.||.||.||.||||||||.|||||.|||.|.||.||.
BL05396___yyc 44 TTT---TGATTGCAGGAATCATATTTATCGCTTTTAATTTAAGACCGGCT 90
BSNT_06219___ 85 ATCACTTCAGTCGGTCCGGTCATCAGCTCTATCCGGGCAGAACTGCACAT 134
||.||..|.|||||.||..|.|||||.||.|||||..|.||..||.|..|
BL05396___yyc 91 ATTACAGCTGTCGGGCCATTGATCAGTTCGATCCGCTCGGATATGGATTT 140
BSNT_06219___ 135 GTCCAATGGGGCA--GCCGGTTTTTTGACCGCACTGCCGCTGCTTTCGTT 182
|.|.|| .|||| |||||.||.|||||..|.|||||||||.|.|||||
BL05396___yyc 141 GACGAA--CGGCATGGCCGGCTTCTTGACGACGCTGCCGCTGTTATCGTT 188
BSNT_06219___ 183 TGCAGTTCTTTCTCCGCTTGCACCTAAGCTTGGACAGCGCCTCGGAAATG 232
.||.||.||.||.|||.|.||.||||||||.||||||...||.||.||||
BL05396___yyc 189 CGCCGTCCTGTCCCCGGTCGCCCCTAAGCTCGGACAGAAGCTTGGCAATG 238
BSNT_06219___ 233 AGCGAACTTTATGGCTAGGTCTCGTGATACTGCTT-ATCGGCGTTTTGAC 281
||.||||..|.|||.|.||..|.||.|| ||..|| |||||..||||| |
BL05396___yyc 239 AGAGAACCCTCTGGGTCGGATTGGTCAT-CTTATTGATCGGAATTTTG-C 286
BSNT_06219___ 282 T-CGTTCTACCGG-----CTA-TACTGCCGCTTTGTTTTTCGGAACGGCA 324
| ||.|||..||| ||| || |.||.|||...|||||.|||
BL05396___yyc 287 TGCGCTCTTACGGAGAATCTATTA------CATTATTTGCAGGAACCGCA 330
BSNT_06219___ 325 CTTATCGGCGTCGGGATTGCGATTGGTAACGTACTTTTGCCAAGCTTAAT 374
.|.|||||.|||||.||.||.||..|.||.||.||..||||.|||.|.||
BL05396___yyc 331 TTGATCGGAGTCGGCATCGCAATCTGCAATGTGCTGCTGCCCAGCCTGAT 380
BSNT_06219___ 375 CAAACATAAATACCCTGA-AAAGCCAGGG-ATCGTGATCAGCCTGTATAC 422
|||||||||||..||||| ||||| ||| ||..|||..||..|.|||||
BL05396___yyc 381 CAAACATAAATTTCCTGACAAAGC--GGGAATTATGACAAGTTTCTATAC 428
BSNT_06219___ 423 GACATCAATGAATATATTCGCAGCTTTAGCATCGGGTGTCAGCGTTCC-- 470
.|||.|.|||...||.||.||.||..|.|||||.||..|||||.||||
BL05396___yyc 429 AACAGCCATGTCGATTTTTGCGGCGCTCGCATCAGGGATCAGCATTCCGT 478
BSNT_06219___ 471 ----------TTTAGCGACCCAGATGGATGGCGGATGGAAACAGGCCTTT 510
.|||||| ||| ||||||| ||...|
BL05396___yyc 479 TGTCGCACGGCTTAGCG-----------TGG-GGATGGA-----GCGCGT 511
BSNT_06219___ 511 CTCTTATG----GGGCGGG-CTGGCTTTACTTGC-ATTGCTAATCTGGAT 554
|.||.||| ||||||| ||.||.||..|||| ||| .|.||||||.|
BL05396___yyc 512 CGCTCATGGTTTGGGCGGGCCTCGCGTTTGTTGCGATT-TTGATCTGGGT 560
BSNT_06219___ 555 ACCTCAGCTGCGCCACCGGGATACGGCAAACCAGACAATGAAGCTGCAAT 604
.||.|||||.|||.|.|..|||||||.|||||..||..| .||||..||.
BL05396___yyc 561 TCCCCAGCTCCGCTATCATGATACGGGAAACCGCACGGT-CAGCTTAAAG 609
BSNT_06219___ 605 CCAG--TTCCA-----TTTGG-GCTTCCAAAATGGCATGGTATGTCACCA 646
.||| ..||| |.||| || ||.|||||.||.|||.|.|||||..
BL05396___yyc 610 GCAGACGGCCAAACGGTCTGGCGC-TCGAAAATTGCCTGGCAGGTCACAT 658
BSNT_06219___ 647 TCTTTATGGGCCTGCAATCGTTTTTATTTTACAGCAGCATCGCTTGGTTT 696
|||||||||||.|.||.||||||||.||||||.|||..|||||.|||.|.
BL05396___yyc 659 TCTTTATGGGCATACAGTCGTTTTTGTTTTACTGCACGATCGCCTGGCTG 708
BSNT_06219___ 697 CCTGAAATTCTCCGTTCACACGGGATTGATACGGCAACA--------GCC 738
||||||||||||||.||.|||||||| .|.|| |||
BL05396___yyc 709 CCTGAAATTCTCCGCTCGCACGGGAT--------GAGCATGTCGCTTGCC 750
BSNT_06219___ 739 GGATGGATGGTATCACTCATGCAATTTGCGAGTCTGCCTTCCACTTTTCT 788
||.||||||.|.||.||.|||||.|||||.||.||.||.||.||.|||.|
BL05396___yyc 751 GGCTGGATGCTGTCGCTGATGCAGTTTGCCAGCCTCCCGTCGACATTTTT 800
BSNT_06219___ 789 GACACCAGTTTTAG-CTGACCGTGTGAAA--CAGCAGCGCGGTATCGTTG 835
|||.||.|||.|.| |.|.|.||.|.||| |||.|..|| |||||
BL05396___yyc 801 GACTCCGGTTCTCGCCGGGCGGTTTCAAAACCAGAAAAGC---ATCGT-- 845
BSNT_06219___ 836 CGGCGCTGGCCTCAGTTTATCTGATCGGC--------CTTTGC--GGAT- 874
|||.||| .||||| |||.|| ||||
BL05396___yyc 846 ----GCTCGCC------------CTCGGCATCCTATACTTGGCGGGGATG 879
BSNT_06219___ 875 -------TATTAGCGGGCGGAAGCCATACA---TTGCTTGCCATCTGGAT 914
|||| |..||||.||..|||| .||||..|..|.|||.|
BL05396___yyc 880 TCAGGGCTATT---GTACGGAGGCAGTACAGCGATGCTGACGCTATGGGT 926
BSNT_06219___ 915 GATCATTATCGGTATCGGGCAAGGCTCCAGCATTAGTCTGGCGCTCACTT 964
.||..|.|||||.||.||.|||||.||||||||.|||.|.||..|.||||
BL05396___yyc 927 CATTTTAATCGGAATTGGACAAGGGTCCAGCATCAGTTTAGCCTTGACTT 976
BSNT_06219___ 965 TGATTGGTCTCCGCAGTGAAAATGCCCAACAGGCCGCTGCGCTGTCAGGC 1014
|.||.||.||..|.||.|||||||||.|.||.|||||.||..|.|||||.
BL05396___yyc 977 TAATCGGGCTGAGAAGCGAAAATGCCGATCAAGCCGCGGCATTATCAGGG 1026
BSNT_06219___ 1015 ATGTCTCAGTCATTCGGCTACCTGCTGGCAGCAGTCGGGCCAATCTTTGT 1064
|||||.||.||...|||.||..||||||||||..|.||.||||.||||||
BL05396___yyc 1027 ATGTCGCAATCCGCCGGATATTTGCTGGCAGCGATTGGTCCAAGCTTTGT 1076
BSNT_06219___ 1065 CGGCTATCTCTTTGACCAGACGCATTCATGGACGATG--CCGATAGTGCT 1112
|||.|.|||.|..||.||.|.|||.||||||| |.| |||||..|.||
BL05396___yyc 1077 CGGTTTTCTTTACGATCACATGCACTCATGGA--ACGGACCGATTTTACT 1124
BSNT_06219___ 1113 TCTCATTGCTGCCCTGATCG---TAATGGGAGCAGCTGGACAGAGAGCCG 1159
..||||.|..||.|||.||| |.||.||.||| ||||...|.||.|
BL05396___yyc 1125 GTTCATCGGCGCGCTGGTCGCTTTGATCGGTGCA---GGACTCGGTGCGG 1171
BSNT_06219___ 1160 GACGAGATCGATACAT-TTTTCAGTCAGAAAAACAAAGAAATTCAGCATA 1208
||.||.|||.|||.|| |.|.| .|||| |||||||
BL05396___yyc 1172 GAAGAAATCAATATATCTATGC-----------TAAAG-----CAGCATA 1205
BSNT_06219___ 1209 A 1209
|
BL05396___yyc 1206 A 1206
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