Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05947 and BL05381

See Amino acid alignment / Visit BSNT_05947 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:01
# Commandline: needle
#    -asequence dna-align/BSNT_05947___yxkD.1.5803.seq
#    -bsequence dna-align/BL05381___yxkD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05947___yxkD-BL05381___yxkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05947___yxkD-BL05381___yxkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05947___yxkD
# 2: BL05381___yxkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 842
# Identity:     640/842 (76.0%)
# Similarity:   640/842 (76.0%)
# Gaps:          10/842 ( 1.2%)
# Score: 2351.0
# 
#
#=======================================

BSNT_05947___      1 ATGAAAAAGAGAATGC--TGGATGTACTTATGCTTGTGATTGGCGCTTTT     48
                     |||||||  ||||.||  ||||..||.|..||.|..|.||.|||||.|||
BL05381___yxk      1 ATGAAAA--AGAAAGCAATGGACATAATATTGATCATTATAGGCGCATTT     48

BSNT_05947___     49 TTCTTCGCGCTTGCGGTTAATTTATTTGCGATTCCCAATGATCTTGGG-G     97
                     |||||.|||.|.||.||.|||.|.||.||.||.||.||||| |||||| |
BL05381___yxk     49 TTCTTTGCGTTAGCCGTGAATCTGTTCGCCATCCCGAATGA-CTTGGGAG     97

BSNT_05947___     98 AAGGCGGAGTCACTGGGATTACGCTGATTTTGTATTATCTGTTTCAATGG    147
                     |||||||.|||||.|||||.|||||||||||.||.||..|.|||.|||||
BL05381___yxk     98 AAGGCGGCGTCACGGGGATCACGCTGATTTTATACTACGTTTTTGAATGG    147

BSNT_05947___    148 TCTCCTGGTGTCACGAACTTTAT-CTTAAATGCGTTTTTGCTTTTAATCG    196
                     |||||.||..||||.||||||.| ||.||..||.||.|| ||..|.||||
BL05381___yxk    148 TCTCCGGGCATCACAAACTTTGTACTGAACGGCATTCTT-CTGATTATCG    196

BSNT_05947___    197 GCTACAAGTTTCTTGATGGAAAAACAACGGTTTATACGATCATTGCGGTT    246
                     ||||....|||.|.|||..|||.||.|||.||||.||.||.||||||||.
BL05381___yxk    197 GCTATCGCTTTTTGGATAAAAAGACGACGATTTACACTATTATTGCGGTG    246

BSNT_05947___    247 GCGGCAAATTCGCTCTTTCTTCATCTGACACATGGGTGGAGCATTCCGTC    296
                     |||||.||||||.|||||||.||..|.||..|.|..||||...|.|||.|
BL05381___yxk    247 GCGGCCAATTCGTTCTTTCTGCACGTCACCGAAGATTGGACGGTGCCGGC    296

BSNT_05947___    297 TGATGAATTGATCATTAATACGATTTTCGCAGGTGTATTTGCCGGAGTCG    346
                     .||||||.|||||||.|..||.||.||.||.||.|||||||||||.||||
BL05381___yxk    297 CGATGAAGTGATCATCAGCACCATCTTTGCCGGGGTATTTGCCGGCGTCG    346

BSNT_05947___    347 GGATCGGCATGATTATCCGGGTCGGCGGGACGACGGCTGGTTCCGCGATT    396
                     |.|||||||||||.|||||.||||||||.||.||.||.||.||.||||||
BL05381___yxk    347 GAATCGGCATGATCATCCGTGTCGGCGGAACCACCGCCGGGTCTGCGATT    396

BSNT_05947___    397 CTGGCCAGAATTGCTAATAAATATTTAGACTGGAATATCAGCTATGCACT    446
                     ||.||.|||||.||.|||||||||||.||||||||.|||||||||||..|
BL05381___yxk    397 CTCGCGAGAATCGCCAATAAATATTTTGACTGGAACATCAGCTATGCCTT    446

BSNT_05947___    447 CTTGTTTTTTGATTTAATCGTAGTATTCAGCTCTTATTTTATTATTGGTG    496
                     ..||.|..|.||||||.|.||.||.|||||.||.||.|||||.|||||.|
BL05381___yxk    447 GCTGATGATCGATTTAGTTGTCGTCTTCAGTTCCTACTTTATCATTGGAG    496

BSNT_05947___    497 CAGAAAAAATGATGTTTACGATCGTGATGCTGTATATCGGTACCAAAGTG    546
                     |.|||||..|||||||||||||.||.||||||||.||||..||.||.||.
BL05381___yxk    497 CTGAAAAGCTGATGTTTACGATTGTCATGCTGTACATCGCCACGAAGGTC    546

BSNT_05947___    547 ATGGACTTCATTATTGAAGGTTTGAATACGAAAAAAGCCATTACGGTCAT    596
                     ||||||||||||||.|||||..|.||.||||||||.||.||.|||.|.||
BL05381___yxk    547 ATGGACTTCATTATCGAAGGGCTCAACACGAAAAAGGCGATCACGATTAT    596

BSNT_05947___    597 TTCAGAAAATAAGAGTGAGATTGCAGAGCAGGTAAATACCTTGATGGATC    646
                     |||.||..||||.|..|||||.||.|.||||||.||||||.|||||||.|
BL05381___yxk    597 TTCCGAGCATAAAAACGAGATCGCGGCGCAGGTCAATACCCTGATGGACC    646

BSNT_05947___    647 GGGGCGTGACGATTTTATCAGGGAAG-GGAAATTATACGGGCCAGTCAAA    695
                     |.|||||.|||||.||||| ||||.| ||..|.|||||||||.|.||.||
BL05381___yxk    647 GCGGCGTCACGATATTATC-GGGACGCGGGCACTATACGGGCGACTCCAA    695

BSNT_05947___    696 AGAGATTTTGTATATCGTCATTAACAAACAGGAGCTGTCTATGCTGAAAA    745
                     |||.|||||.||.||.||||||||.|||||.||||||||.||||||||.|
BL05381___yxk    696 AGAAATTTTATACATTGTCATTAATAAACAAGAGCTGTCCATGCTGAAGA    745

BSNT_05947___    746 AAATCATTAGAAGCTGCGACAAAAAAGCGTTTGTGATCGTACATGACGTA    795
                     ||||.|||||||||...||.||||||||.|||||.|||.|.||.||.||.
BL05381___yxk    746 AAATTATTAGAAGCACAGATAAAAAAGCATTTGTCATCATCCACGATGTC    795

BSNT_05947___    796 CGCGATGTGTTTGGCGAAGGGTTTGTGGATATATCTAAATAA    837
                     .|.|||||.||.|||||.||.|||||.|||||.||.|||||.
BL05381___yxk    796 AGGGATGTATTCGGCGAGGGATTTGTTGATATTTCAAAATAG    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05947 and BL05381

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
