Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04908 and BL05331
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04908.1.5803.seq
# -bsequence dna-align/BL05331___yusZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04908-BL05331___yusZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04908-BL05331___yusZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04908
# 2: BL05331___yusZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 913
# Identity: 461/913 (50.5%)
# Similarity: 461/913 (50.5%)
# Gaps: 290/913 (31.8%)
# Score: 1213.5
#
#
#=======================================
BSNT_04908 0 -------------------------------------------------- 0
BL05331___yus 1 TTGAACAATAAAATCGCAATTGTAACGGGCGCGACGAGCGGATTTGGTTT 50
BSNT_04908 0 -------------------------------------------------- 0
BL05331___yus 51 ATTGACCGCTTTAAAACTCGCAAGCACTCATTTCGTAATCGCAACGGCGC 100
BSNT_04908 1 --------------------------------------------GTGTCT 6
.||||
BL05331___yus 101 GCCATCCAGAAAAAGCGGAAGCTCTGCGGAACCGTATAGCGGAGCTGTC- 149
BSNT_04908 7 GATTCTATTCA--CATTAC---AGCT---CTCGATGTCACCGATGAACAA 48
|| ||.|.||| .|||.| .||| ||.||||||||..|.||||||
BL05331___yus 150 GA-TCGAGTCATCGATTGCCGTCGCTGAACTTGATGTCACAAACGAACAA 198
BSNT_04908 49 TCTATAGTCTCA--TTCGGAA------AAGCCATTAGTGCTTACGCCCCG 90
||.||...|||| |||.||| |||| || ||||..|.|
BL05331___yus 199 TCGATTTCCTCATTTTCCGAAGAGCTGAAGC----AG----TACGGACAG 240
BSNT_04908 91 ATCGACTTACTCGTTAACAACGCCGGAACGGCTTATGGAGGATTTATCGA 140
||.|||.|.|||.|.||.||.||.||||||||.||.||.|||| |||.
BL05331___yus 241 ATAGACGTTCTCATCAATAATGCAGGAACGGCATACGGCGGAT---TCGC 287
BSNT_04908 141 GGATG----------TGCCGATGGAACATTTCAGAGAACAATTTGAAACG 180
.||.| ||.|| |.|.||||.||||.|.|||.||.
BL05331___yus 288 TGAAGAGCTTTCTCTTGGCG-------ACTACAGAAAACAGTATGACACC 330
BSNT_04908 181 AATGTCTTCGGTGTGAT-CCATGTGACAAAAACCGTTCTCCCTTACAT-A 228
|||||.|||||..||.| .|| ||.||||||.|.||.||.|||||.|| |
BL05331___yus 331 AATGTTTTCGGCCTGGTGGCA-GTCACAAAAGCGGTCCTTCCTTATATGA 379
BSNT_04908 229 AGAAAGCATGGCGGCGCAAAGATTATAAACGTGAGCAGCATCAGCGGACT 278
||||| ||..|||||||.||.||.||.||..||||||||||||||||.|.
BL05331___yus 380 AGAAA-CACAGCGGCGCCAAAATCATCAATCTGAGCAGCATCAGCGGGCG 428
BSNT_04908 279 GACCGGATTCCCAGCGCTGTCGCCATATGTTTCTTCTAAGCATGCATTGG 328
||.||..|||||.||..|.|||.||||||.|||.||.|||||||||.|.|
BL05331___yus 429 GATCGCTTTCCCCGCTTTCTCGGCATATGCTTCATCAAAGCATGCAGTTG 478
BSNT_04908 329 AAGGTTTTTCTGAAAGCCTGCGTATCGAGCTGCTTCCGTTCGGTATCGAA 378
||||.|||||.||||||||.||..||||.||.|.|||.|||||.||| |
BL05331___yus 479 AAGGCTTTTCAGAAAGCCTCCGCCTCGAACTCCGTCCATTCGGCATC--A 526
BSNT_04908 379 A-----CCGCTTTGATCGAGCCGGGCTCATACAAGACATCGATCTGGTCA 423
| ||| |..||.|||||||.||.|||.||||..||||.|||...
BL05331___yus 527 ATGTGGCCG---TCGTCCAGCCGGGATCGTACCAGACGGCGATTTGGGAG 573
BSNT_04908 424 ACGTCATTAT------CAAATTTTATGTCGGTG--CCTGCTGACGATTCA 465
||.||.|| | ||| |||..|| ||||.||.|||.|||
BL05331___yus 574 ACATCGTT-TGCCGCCCAA-------GTCACTGCACCTGATGCCGAATCA 615
BSNT_04908 466 GCCTATCATCAATACTATAAAAAGATCCTTT--------------CCTAT 501
||.||| ||||.|| .||| ||||.
BL05331___yus 616 ---------CAGTAC----AAAACAT-ATTTCGAGCGGATCTCCGCCTAC 651
BSNT_04908 502 GTT-CAAAAAACCGGAGAAGAAAGCGGAGATCCCCAAGAGGTTGCCGACC 550
.|| ||...|.|||.| ||.|...||||.|.||..|.||.||.||.||
BL05331___yus 652 ATTGCAGCGAGCCGCA-AACATTACGGAAACCCGGATGATGTGGCTGA-- 698
BSNT_04908 551 TCATTTAT----CAATTGGCAACAAAACAGCACATAAAGAAATTGCGATA 596
|||.|| |.|.|.||..|||||.|||...|.||.|...||||.||
BL05331___yus 699 --ATTGATCTGCCGACTCGCTGCAAAAAAGCGGCTGAACAGGCTGCGCTA 746
BSNT_04908 597 CCCGATCGGAAAGGGCATCAAGCTC---ACCCTGCT------ATTCCGAT 637
.||||||||.|.||||.||...||| |.|||.|| |.|||
BL05331___yus 747 TCCGATCGGCAGGGGCGTCCGTCTCTCGATCCTTCTCCACCAAATCC--- 793
BSNT_04908 638 CGCTTTTTCCTTGGTCTGCG----TGGGA--GT-CTATCCTGAAGAAAAA 680
|.||.|| ||| ||||| || |..||.|.||.|||..
BL05331___yus 794 ------TGCCATG----GCGGATTTGGGAACGTGCGGTCATAAAAAAATT 833
BSNT_04908 681 GCTATTCAAATAA 693
|| |.||||.|
BL05331___yus 834 GC---TTAAATGA 843
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