Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03956 and BL05284

See Amino acid alignment / Visit BSNT_03956 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:58
# Commandline: needle
#    -asequence dna-align/BSNT_03956___yrhC.1.5803.seq
#    -bsequence dna-align/BL05284___yrhC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03956___yrhC-BL05284___yrhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03956___yrhC-BL05284___yrhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03956___yrhC
# 2: BL05284___yrhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     159/255 (62.4%)
# Similarity:   159/255 (62.4%)
# Gaps:          45/255 (17.6%)
# Score: 454.5
# 
#
#=======================================

BSNT_03956___      1 TTGCACAAAAATAGAATGAAATCTTTAAAAGAAGACTACAAGCATTTTGC     50
                     .||||.||.||.|.|.|.|||||..|.|..||||||||.|||||.|||||
BL05284___yrh      1 ATGCAGAAGAAAAAAGTCAAATCGCTGATGGAAGACTATAAGCAGTTTGC     50

BSNT_03956___     51 TTTTACATTGCTT----GCAGTCAGCACTTTTTTATATATAGGTGCAGTT     96
                     ||||||   ||||    || ||.|||.|.|||||||||||.||..|.||.
BL05284___yrh     51 TTTTAC---GCTTCTCAGC-GTAAGCGCATTTTTATATATCGGATCTGTC     96

BSNT_03956___     97 CTCCCTGATCAAGGCTT---AACATTAGGCCAGAA-ATCGACGATGTTTT    142
                     .|.||.|..|||||.||   |||   ||||||.|| || |||.|||.|..
BL05284___yrh     97 ATTCCGGGACAAGGTTTGGAAAC---AGGCCAAAAGAT-GACAATGATGC    142

BSNT_03956___    143 TAGCGGATTGCGTATTTTTAGCCGGTGCCTTCTTTT-------GCGCTGA    185
                     |.|||...||||..|||||||..||.||.||||.||       |||||  
BL05284___yrh    143 TCGCGACGTGCGGCTTTTTAGGAGGAGCTTTCTATTGTGTGAAGCGCT--    190

BSNT_03956___    186 CCGTTCACTTAT---------TTACAAGAAGCGTCTGGAAGAAGCTGACG    226
                      ||.|||..|||         |||.|.|||    .||||||||.|     
BL05284___yrh    191 -CGCTCAAATATAAAAGACAATTAGACGAA----ATGGAAGAATC-----    230

BSNT_03956___    227 AATAA    231
                      ||||
BL05284___yrh    231 -ATAA    234


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.