Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03934 and BL05280

See Amino acid alignment / Visit BSNT_03934 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:57
# Commandline: needle
#    -asequence dna-align/BSNT_03934___yrhK.1.5803.seq
#    -bsequence dna-align/BL05280___yrhK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03934___yrhK-BL05280___yrhK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03934___yrhK-BL05280___yrhK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03934___yrhK
# 2: BL05280___yrhK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     198/309 (64.1%)
# Similarity:   198/309 (64.1%)
# Gaps:          63/309 (20.4%)
# Score: 654.5
# 
#
#=======================================

BSNT_03934___      1 ATGGTGACAGTAAATGAAGAACATGACTTCCAAAAAGAGCTGAAACGATA     50
                     |||    |.|.|||..||.|||                    ||||||||
BL05280___yrh      1 ATG----CCGCAAAACAATAAC--------------------AAACGATA     26

BSNT_03934___     51 TGAACTTTTTTTCAAAAAACGATATAAGATTCTTTATACAGTAAACGATT    100
                     ||||||.||||||||||||.||||.||..||||..|||||.|||||||||
BL05280___yrh     27 TGAACTCTTTTTCAAAAAAAGATACAAAGTTCTACATACATTAAACGATT     76

BSNT_03934___    101 TTATCATTGGTGCTTTGTTTCTCGTCGGGAGCTTTTTCTTTTTTTATGAC    150
                     ||.||||.||...|||.||.||.|||||||||||.|.||||||.|    |
BL05280___yrh     77 TTCTCATCGGCCTTTTATTCCTTGTCGGGAGCTTCTGCTTTTTCT----C    122

BSNT_03934___    151 CGA-----TTAATGTCGGCAGGGA-TATGGCTGTTTGCGATCGGAAGTTT    194
                     |||     |.|| |.|||| |||| |||||.||||||.||||||.||.||
BL05280___yrh    123 CGAGGAACTGAA-GCCGGC-GGGACTATGGATGTTTGTGATCGGCAGCTT    170

BSNT_03934___    195 GCTGCTGTTAATTAGGCCGACCATTCGGCTGATTCATGACTTTCATTACC    244
                     .|.|||||||||.||||||||.||.||..||.|||||||.|||||.|||.
BL05280___yrh    171 TCAGCTGTTAATCAGGCCGACGATCCGTTTGGTTCATGATTTTCACTACA    220

BSNT_03934___    245 GTAAGCATGTGGAACAGCAATTCAAGCATCAATC----TTCAACAGATGA    290
                     |.|||..|||.||          .|||      |    |||  ||.|||.
BL05280___yrh    221 GAAAGTTTGTTGA----------GAGC------CGGCGTTC--CAAATGC    252

BSNT_03934___    291 C-TGA----    294
                     | |||    
BL05280___yrh    253 CGTGAGTAA    261


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