Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03564 and BL05261
See
Amino acid alignment /
Visit
BSNT_03564 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:33
# Commandline: needle
# -asequence dna-align/BSNT_03564___yqjA.1.5803.seq
# -bsequence dna-align/BL05261___yqjA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03564___yqjA-BL05261___yqjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03564___yqjA-BL05261___yqjA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03564___yqjA
# 2: BL05261___yqjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 998
# Identity: 718/998 (71.9%)
# Similarity: 718/998 (71.9%)
# Gaps: 67/998 ( 6.7%)
# Score: 2492.5
#
#
#=======================================
BSNT_03564___ 1 ATGTTTAAAATTGGTTATCGCACAATAAAGACCGCGCTAGGAACAGCTTT 50
|||||||||||.||||||||||||.||||.||.|||||.||||||||.|.
BL05261___yqj 1 ATGTTTAAAATAGGTTATCGCACATTAAAAACAGCGCTTGGAACAGCATC 50
BSNT_03564___ 51 GGCTATTTATATAAGC-CAGTTATT--GCATTTGCAAAACTTCGCATCAG 97
|||.||.||||| .|| |||.|..| || .|.||.||.||.|..||..
BL05261___yqj 51 GGCCATCTATAT-CGCACAGCTGCTCGGC--CTCCATAATTTTGTGTCGA 97
BSNT_03564___ 98 CAGGAATCATCACCATTTTGTGCATACAAATCACACAAAAACGGTCGCTT 147
||||.||||||||.||..|.||.||.|||.|.||..||||||||||.|||
BL05261___yqj 98 CAGGGATCATCACGATCCTCTGTATTCAAGTGACGAAAAAACGGTCCCTT 147
BSNT_03564___ 148 CAGGCCTCATGGGCCCGCTTTGCGGCATGTTGTCTGGCAATTGTTTTTTC 197
|||||.||||||||.||.|||||.|||||...|||.||.||.||.|||||
BL05261___yqj 148 CAGGCATCATGGGCACGGTTTGCAGCATGCATTCTTGCGATCGTCTTTTC 197
BSNT_03564___ 198 TTATCTC-TTTTTCGAGCTTATTGGCTACCACCCGTTTGTTATCGGAGCG 246
.|| |.| |||||.|||||.||.|||||.||.||...|||.|||||...|
BL05261___yqj 198 ATA-CGCATTTTTTGAGCTGATCGGCTATCATCCTGCTGTCATCGGTCTG 246
BSNT_03564___ 247 CTTCTTTTGATATTCATTCCGATAACGGTTCTGTTAAAAATTAACGAAGG 296
.|.||..||.|.||.|||||||.|||.|||||..|.|||||.||.|||||
BL05261___yqj 247 ATGCTGCTGTTCTTTATTCCGACAACCGTTCTTCTGAAAATAAAAGAAGG 296
BSNT_03564___ 297 TATCGTCACCAGTTCCGTTATTATCCTTCA--TTTATACATGTCCGGCGG 344
.||||||||.|||||.||.||.||.||||| ||||| |||||.|..||
BL05261___yqj 297 AATCGTCACAAGTTCGGTCATCATTCTTCACCTTTAT--ATGTCGGAAGG 344
BSNT_03564___ 345 CATTACGCTTGCTTTCATCTGGAATGAAGT-----TCAGCTGATTACGGT 389
.||.||.|||.||.||.|.|||||.|||.| ||| |.||||||
BL05261___yqj 345 GATCACCCTTTCTCTCGTTTGGAACGAATTCCTTATCA--TCATTACG-- 390
BSNT_03564___ 390 TGGCATCGGCGTCGCTCTATTGATGAACTTGTATATGCCTAGTCT----- 434
||.||||||||.||.||..|||||||..||||.|||||.||.||
BL05261___yqj 391 -GGAATCGGCGTAGCCCTGCTGATGAATCTGTACATGCCGAGCCTCGATA 439
BSNT_03564___ 435 -TGACCGGAAACTGATTGCCTA-CCGCAAAAAGATAGAGGATAACTTTGC 482
.||.|..||||.| || |.|||.||| |||||.|||||||||||
BL05261___yqj 440 AAGAGCTCAAACAG------TATCAGCAGAAA-ATAGAAGATAACTTTGC 482
BSNT_03564___ 483 TGTCATTTTTGCAGAAATCGAACGGTATTTGTTAACTGGTGAGCAAGATT 532
....|||||||.|||||||||||||||||||.|.||.||.|||||.||||
BL05261___yqj 483 CAAGATTTTTGAAGAAATCGAACGGTATTTGCTGACCGGGGAGCAGGATT 532
BSNT_03564___ 533 GGTCAGGAAAAGAAATTCCGGAAACGCACCAGCTCATTACGGAGGCTAAA 582
||.|.||||||||.|||||.||.|||||||...|.||.|..||.||.||.
BL05261___yqj 533 GGACGGGAAAAGAGATTCCTGAGACGCACCGTTTGATCAATGAAGCGAAG 582
BSNT_03564___ 583 AACCTGGCATATCGAGATGTGCAAAACCACATTTT-----GCGTTATGAA 627
|.|||||||||.||.||||||.|||| .|||||| || |.|||
BL05261___yqj 583 ACCCTGGCATACCGCGATGTGGAAAA--TCATTTTCTCAGGC---ACGAA 627
BSNT_03564___ 628 AATCTGCATTATCATTATTTTAAAATGAGAGAAAAGCAATTTGAAATTAT 677
||.||..|||||||.||.||||||||||||||||||||||||||||||||
BL05261___yqj 628 AACCTCTATTATCACTACTTTAAAATGAGAGAAAAGCAATTTGAAATTAT 677
BSNT_03564___ 678 CGAACGCCTTCTCCCTAAAGTGACATCGATCTCCATTACGGTAGATCAGG 727
||||.|..||||.||.|||.|.||.|||||.||.||.|||||.||.||||
BL05261___yqj 678 CGAAAGGGTTCTGCCGAAAATCACGTCGATTTCGATGACGGTTGAACAGG 727
BSNT_03564___ 728 GAAAAATGATCGCTGAATTTATTCATGATTTGCG-GGAGGCGATACACCC 776
|..|.||||||||.|..|||.|.||||||||..| ||| ||.||.||.||
BL05261___yqj 728 GGCAGATGATCGCGGCGTTTCTCCATGATTTAAGAGGA-GCCATCCATCC 776
BSNT_03564___ 777 TGGGAATACAGCGTACAAATTTCTGAAAAGACTTGCTG-ACATGAGAAAA 825
.||.|||||.||..|.||||||.||||..|.||.| || |.||||||.|.
BL05261___yqj 777 CGGAAATACGGCTCATAAATTTTTGAAGCGGCTCG-TGAAAATGAGAGAG 825
BSNT_03564___ 826 GAATTTGAGGAGATGCCGCTTCCGGCGACTAGAGAGGAATTTGAAGCAAG 875
|||.|.||.||||||..|||.|||.||||..||||.|||||||||||..|
BL05261___yqj 826 GAAATCGAAGAGATGGAGCTGCCGACGACACGAGAAGAATTTGAAGCGCG 875
BSNT_03564___ 876 GGCCGCTCTCTTCCATCTTCTCGGCGAAATGGAACAATATTTAGTGATTA 925
.||.|||||.|||..|.|||||||||||||||||||.|||.|.|||||||
BL05261___yqj 876 CGCTGCTCTTTTCATTTTTCTCGGCGAAATGGAACAGTATCTTGTGATTA 925
BSNT_03564___ 926 AAAGTTATTTTAAAGGAATAAAAGC----GCAAAAATCACTCGGATGA 969
|.|||||.||||||||.||.|||.| |||.||
BL05261___yqj 926 AGAGTTACTTTAAAGGTATTAAATCTCCTGCATAA------------- 960
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.