Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03552 and BL05260

See Amino acid alignment / Visit BSNT_03552 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:33
# Commandline: needle
#    -asequence dna-align/BSNT_03552___yqzJ.1.5803.seq
#    -bsequence dna-align/BL05260___yqzJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03552___yqzJ-BL05260___yqzJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03552___yqzJ-BL05260___yqzJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03552___yqzJ
# 2: BL05260___yqzJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 317
# Identity:     200/317 (63.1%)
# Similarity:   200/317 (63.1%)
# Gaps:          49/317 (15.5%)
# Score: 587.5
# 
#
#=======================================

BSNT_03552___      1 ATGGATGTGATGACAATGTTTGTGGAATCGATAAATGACG-TTTTATTCT     49
                                    |||.||.|.|||||..|.||.||.| ||||.||||
BL05260___yqz      1 ---------------ATGATTCTTGAATCTTTCAACGATGCTTTTTTTCT     35

BSNT_03552___     50 TAGTCGATTTTTTCACAATTATTCTTCCTGCTCTAACGGCAATCGGGATT     99
                     .| |.||.|||||||||||..|.||.||.||.||.|||||.|||||.||.
BL05260___yqz     36 GA-TTGAGTTTTTCACAATCGTCCTCCCCGCACTGACGGCGATCGGTATC     84

BSNT_03552___    100 GCATTTCTCTTACGGGAGTGCCGTGTGGGCG--AGCAATGGAAATCAAAA    147
                     ||..|..||.|...|||.|||.||..|||.|  |||  ||||||.|.|||
BL05260___yqz     85 GCCCTGATCCTGAAGGATTGCAGTACGGGAGACAGC--TGGAAAACGAAA    132

BSNT_03552___    148 CGAACAGATGAACATC-----AGACGG--TCTTTC-ACATTAACCGAACA    189
                     ||....||.|||.|||     |.||.|  |.|||| .||.|        .
BL05260___yqz    133 CGGTTTGAAGAATATCATGCAATACAGTTTGTTTCTGCAGT--------C    174

BSNT_03552___    190 GACTTTCTTATTATTATATATCATCGCATTACAACTTGGATACGTAAAGT    239
                     ||.|||||.||.||..||||||||||||||||....||||||.|||||||
BL05260___yqz    175 GATTTTCTCATCATCCTATATCATCGCATTACGGTATGGATAAGTAAAGT    224

BSNT_03552___    240 CTTCCGCATGAA---TTCGCCTGTGAACGATGAGGAAGA-CGCCGGTTC-    284
                     |.|.||||||||   |||..|   ||||||.||.||||| |.|||.||| 
BL05260___yqz    225 CATTCGCATGAAAGCTTCATC---GAACGACGATGAAGACCACCGTTTCC    271

BSNT_03552___    285 -TCTTCTTT---TATAA    297
                      ||||||||   |.|||
BL05260___yqz    272 TTCTTCTTTCAATTTAA    288


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