Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03511 and BL05253

See Amino acid alignment / Visit BSNT_03511 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_03511___nudF.1.5803.seq
#    -bsequence dna-align/BL05253___nudF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03511___nudF-BL05253___nudF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03511___nudF-BL05253___nudF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03511___nudF
# 2: BL05253___nudF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity:     414/568 (72.9%)
# Similarity:   414/568 (72.9%)
# Gaps:          11/568 ( 1.9%)
# Score: 1454.5
# 
#
#=======================================

BSNT_03511___      1 ATGA--------AATCA-TTAGAAGAAAAAACAATTGCCAAAGAACAGAT     41
                     ||||        ||.|| |||||.||.|||||.||..|.||.|||.||.|
BL05253___nud      1 ATGATCAAACTGAAGCATTTAGAGGAGAAAACCATATCAAAGGAAAAGCT     50

BSNT_03511___     42 CTTTTCGGGTAAAGTCATTGATCTTTATGTCGAGGATGTAGAGCTGCCAA     91
                     .|||||.||.||.||.||.|||||||||.|.||.|||||.||.|||||.|
BL05253___nud     51 TTTTTCAGGCAAGGTGATCGATCTTTATCTTGAAGATGTCGAACTGCCGA    100

BSNT_03511___     92 ACGGCAAAGCCAGTAAACGTGAAATTGTGAAACACCCTGGAGCTGTAGCG    141
                     ||||.|||.|..|.||.||.|||||.|||||.||.||.||.|||||||||
BL05253___nud    101 ACGGTAAAACGGGAAAGCGCGAAATCGTGAAGCATCCGGGCGCTGTAGCG    150

BSNT_03511___    142 GTACTAGCCGTCACAGATGAAGGGAAAATCATCATGGTCAAACAATTCCG    191
                     ||.||.||..|.||.|||||||..||.||||||.|.||.||.||.|.|.|
BL05253___nud    151 GTGCTTGCTTTAACTGATGAAGAAAACATCATCTTAGTTAAGCAGTACAG    200

BSNT_03511___    192 TAAGCCGCTTGAGCGGACGATCGTTGAAATTCCGGCCGGTAAGCTTGAAA    241
                     .||..|||||||.|||||||||||||||||.|||||.||.||||||||||
BL05253___nud    201 AAAAGCGCTTGAACGGACGATCGTTGAAATACCGGCGGGCAAGCTTGAAA    250

BSNT_03511___    242 AAGGTGAGGAGCCGGAGTATACGGCACTTCGGGAACTTGAAGAGGAAACC    291
                     ||||.|||.|.||.||.|||||.||.||.|||||.|||||.||.||.||.
BL05253___nud    251 AAGGGGAGAAACCCGAATATACCGCGCTGCGGGAGCTTGAGGAAGAGACG    300

BSNT_03511___    292 GGTTATACAGCAAAAAAAC-TGACAAAAATAACTGCGTTTTATACATCAC    340
                     ||.||.||.||....||.| ||| .|||||.||.||.|||||.|||||.|
BL05253___nud    301 GGATACACGGCGGCGAAGCTTGA-GAAAATCACCGCTTTTTACACATCGC    349

BSNT_03511___    341 CCGGATTTGCAGATGAGATCGTTCACGTTTTTCTTGCTGAGGAGCTTTCT    390
                     |.||.|||||.||.||..|.||.||..|.|..||.|||||.|||||..|.
BL05253___nud    350 CGGGCTTTGCGGACGAACTGGTGCATCTGTACCTGGCTGAAGAGCTGACG    399

BSNT_03511___    391 GTGCTTGAAGAAAAACGGGAGCTTGATGAGGACGAGTTTGTTGAAGTGAT    440
                     ..||||||||||||.||.||.||||||||.|||||.|||||||||||..|
BL05253___nud    400 CCGCTTGAAGAAAAGCGCGAACTTGATGAAGACGAATTTGTTGAAGTACT    449

BSNT_03511___    441 GGAGGTGACGCTTGAAGATGCGCTAAAGCTGGTTGAATCGCGTGAAGTAT    490
                     |||||||.|||||..||..|||||.||.|||.|.|||.|.|..||..|.|
BL05253___nud    450 GGAGGTGCCGCTTTCAGGCGCGCTGAAACTGATGGAAACTCAGGACATCT    499

BSNT_03511___    491 ATGATGCTAAAACAGCCTACGCGATTCAGTATCTTCAACTGAAAGAAGCG    540
                     |||||||.|||||.||.||.||..|.||||||||..|.||||.|.|.||.
BL05253___nud    500 ATGATGCGAAAACGGCTTATGCCGTGCAGTATCTGGAGCTGAGAAAGGCC    549

BSNT_03511___    541 CTCCAAGCACAAAAATGA    558
                     ||.||||||.||||||||
BL05253___nud    550 CTGCAAGCAAAAAAATGA    567


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