Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02107 and BL05244
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:35
# Commandline: needle
# -asequence dna-align/BSNT_02107___rapA.1.5803.seq
# -bsequence dna-align/BL05244.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02107___rapA-BL05244.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02107___rapA-BL05244.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02107___rapA
# 2: BL05244
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1252
# Identity: 773/1252 (61.7%)
# Similarity: 773/1252 (61.7%)
# Gaps: 242/1252 (19.3%)
# Score: 2178.5
#
#
#=======================================
BSNT_02107___ 1 ATGAAGC---AGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGA 47
.|| ||| |.| ||.||.||..|....|||||..|.|||||||||||
BL05244 1 GTG-AGCGTAAAA--ATCCCATCGACGGCAGTCGGCGTAAAAATTAATGA 47
BSNT_02107___ 48 ATGGTAT-ACTC-ATATCCGGCAGTTCCACGTCGCTGAAGCCGAACGGGT 95
.|||||| ||.| ||| ||..|.|||.|||||.|.||.||||||
BL05244 48 CTGGTATAACGCGATA--CGTAAATTCAACGTCACGGACGCCGAA----- 90
BSNT_02107___ 96 CAAGCTCGAA-GTAGAAA------GAGAAATTGAGGATATGGAAGAAGAC 138
|.||| ||| |.||||| |.||||||....|.||||||||.||.
BL05244 91 -ATGCT-GAAGGCAGAAATTGAGCGCGAAATTTCTCAAATGGAAGAGGAT 138
BSNT_02107___ 139 CAAGATTTGCTGCTGTATTATTCTTTAATGGAGTTCAGGCATCGTGTCAT 188
|||||.||..|..|||||||..|.||||||||.|||||.||..|..||||
BL05244 139 CAAGACTTATTATTGTATTACGCCTTAATGGAATTCAGACACAGAATCAT 188
BSNT_02107___ 189 GCTGGATTACATTAAGCCTTTTGGAGA---GGACACGTCGCAGCTAGAGT 235
|||.||||||.|.||.|||||.|.||| .||.||..||| || ||.|
BL05244 189 GCTTGATTACGTAAAACCTTTGGAAGAAGGCGAAACCCCGC--CT-GACT 235
BSNT_02107___ 236 TTTCAGAATTATTAGAAGACATCGAAG-GGAATCAGTACAAGCTGACAGG 284
||||.|||.|||||.||||.||||||| .|||..||.| |||||||||||
BL05244 236 TTTCTGAAATATTAAAAGATATCGAAGATGAACAAGGA-AAGCTGACAGG 284
BSNT_02107___ 285 GCTTCTCGAATATTACTTTAATTTTTTTCGAGGAATGTATGAATTTAAGC 334
.||.|||||||||||.|||||.||||||.||||.||||||||||.|||..
BL05244 285 CCTGCTCGAATATTATTTTAACTTTTTTAGAGGGATGTATGAATATAAAA 334
BSNT_02107___ 335 AGAAGATGTTTGTCAGTGCCATGATGTATTATAAA--------------- 369
| ||||||| |||..||||
BL05244 335 A-----------------CCATGAT-TATATTAAAGCGATCTCTTTTTAC 366
BSNT_02107___ 370 ---CGGGCAGAAAAGAATCT--TGCCCTCGTCTCGGATGATATTGAGAAA 414
||.||.|||||.||.|| || |.||||..|||.||.||.||||.|
BL05244 367 AGGCGCGCCGAAAAAAAGCTGCTG--CACGTCGAGGACGAAATAGAGAGA 414
BSNT_02107___ 415 GCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAAC 464
|||||||||..|||||||||||||||..|.|||||..||.|.|||||.|.
BL05244 415 GCCGAGTTTCATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAGAG 464
BSNT_02107___ 465 CTATGTTTCGATGAGCTACGCCGTTCAGGC-ATTAGAAACATACCAAATG 513
|.||||.|||||||.|||.||..||||.|| ||| |||||.||.||...|
BL05244 465 CCATGTGTCGATGAACTATGCGCTTCAAGCGATT-GAAACCTATCAGGCG 513
BSNT_02107___ 514 TATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGTTATTGCAGG 563
.|||||||.|||||.||.||.|||||||||||.||.|||||.||.|||||
BL05244 514 CATGAAACCTACACGGTTCGGAGAATCCAATGCGAGTTCGTCATCGCAGG 563
BSNT_02107___ 564 TAATTATGATGATATGCAGT---ATCCAGAAAGAGCATTGCCCCA-CTTA 609
.||.|||||.|||.|..||| || ||||.|||..||.|.|| |||
BL05244 564 GAACTATGACGATTTAGAGTCGAAT---GAAAAAGCGCTGTCACATCTT- 609
BSNT_02107___ 610 GAACTGGCTTTAGATCTTGCAAAGAAGGAAGGCAATCCCCGCCTGATCAG 659
|||..|||..|..|.|||.||.||.|.|||||| |||
BL05244 610 GAAAAGGCGCTGAAGCTTTCACAGCAAGAAGGC--------------CAG 645
BSNT_02107___ 660 TTC------------CGC-CCTA-TATAATCTCGGAAACTGCTATGAGAA 695
.|| |.| |||| ||.|||.|.||||||||||||.|.||
BL05244 646 CTCATATTGGAAGGACACACCTATTACAATTTGGGAAACTGCTATTATAA 695
BSNT_02107___ 696 AATGGGTGAACTGCAAAAGGCAGCCGAATACTTTGAGAAATCTGTTTCTA 745
.|||||.||..|..|..||||||||||.|||||..|.|...|||.|.|.|
BL05244 696 GATGGGGGATTTCGATCAGGCAGCCGAGTACTTCAACAGGGCTGCTGCGA 745
BSNT_02107___ 746 TTT-GCAAGTCGGAAAAGT--TC-GATAATCTTCC----GCATTCTATCT 787
||| .||| |||.||| || ||||.|||||| ||.|| |.||
BL05244 746 TTTATCAA----GAAGAGTCATCAGATATTCTTCCAAAAGCGTT-TTTC- 789
BSNT_02107___ 788 ACTCTT---------TAACACAAGTTCTGTATAAACA-----AAAA---- 819
|.|||| ||...|||||| .||.|| ||||
BL05244 790 AGTCTTGCACTTGCATATTTCAAGTT-----GAAGCAGCTGGAAAAGGCG 834
BSNT_02107___ 820 AATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCG 869
.||||| |||..|||.| |||||.|.||.||||||||
BL05244 835 GATGAC------GCGTTAAACA---------AAGGAATTGACATCGCCCG 869
BSNT_02107___ 870 TCAATACAG-TGATGAATTATTCG-TGGAGCTT------TTTCAATTTTT 911
.|.|| ||| .|||| || |..|.||| |||||.|||||
BL05244 870 CCGAT-CAGACGATG-------CGATCTACCTTTCAAAATTTCATTTTTT 911
BSNT_02107___ 912 ACATGCGTTATACGGAAAAAACATTGA----CACAGAATCGGTCTC---- 953
|.|.||.||.||.| |||| .||.|.| ||.|||
BL05244 912 AAAAGCTTTGTATG---------TTGATGATGACGGCA--GGGCTCCAAT 950
BSNT_02107___ 954 -----ACACACCTTTCAATTTCTTG-----AAGAACATATGCTGTATCCT 993
|.||| |||||..|.||.| ||.|| |.|||||||.
BL05244 951 GCTGGAGACA--TTTCAGCTGCTCGGGTCAAAAAA-----GATGTATCCC 993
BSNT_02107___ 994 TATATTGAAGAGCTGGCGCAT--GATGCTGCCCAATTCTATATAGAAAAC 1041
.|||||||.||..|| |||| ||.||.||..|||.|||||..||||..
BL05244 994 GATATTGAGGACTTG--GCATTGGAAGCAGCTGAATACTATAATGAAATT 1041
BSNT_02107___ 1042 GGACAGCCCGAAAAAGC-ACT---TTCATTT-TATGAGAAAATG------ 1080
||.| ||..| ||| ||| ||.|||| ||| .|||.|
BL05244 1042 GGGC-GCTTG----AGCGACTCTGTTTATTTCTAT---CAAACGGTATTC 1083
BSNT_02107___ 1081 -GTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCT 1129
||||.|| |||||||||..|.|.|||.||.||.|..||||||||||
BL05244 1084 AGTGCTCG----AAAACAAATGAAAAAAGGGGACTGGTCGTATGAAATCT 1129
BSNT_02107___ 1130 AA 1131
||
BL05244 1130 AA 1131
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