Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03430 and BL05240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:25
# Commandline: needle
# -asequence dna-align/BSNT_03430___ypaA.1.5803.seq
# -bsequence dna-align/BL05240.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03430___ypaA-BL05240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03430___ypaA-BL05240.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03430___ypaA
# 2: BL05240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity: 394/631 (62.4%)
# Similarity: 394/631 (62.4%)
# Gaps: 110/631 (17.4%)
# Score: 1095.5
#
#
#=======================================
BSNT_03430___ 1 GTGAAAGTAAAAAAATTAGTTGTG-------------GTCAGCATGCTGA 37
|.|.||.|.||..||.||.| .||||||||||||
BL05240 1 ----ATGAAACACAACAAGGTGAGACGTCTCGTCTCTATCAGCATGCTGA 46
BSNT_03430___ 38 GCAGCATTGCATTTGTTTTGATGCTGTTAAATTTCCCGTTTCC---GGGT 84
|||||||.||||||.||||.|||.||.|.|..||.||| .||| |||.
BL05240 47 GCAGCATCGCATTTATTTTAATGATGCTGAGCTTTCCG-ATCCTGGGGGC 95
BSNT_03430___ 85 CTTCCGGATTATTTAAAAATCGATTTTAGCGACGTTCC---------CGC 125
.||||.| |||||||||||||||||.||.||..|.|| |||
BL05240 96 ATTCCCG--TATTTAAAAATCGATTTCAGTGATATCCCGGCATTGCTCGC 143
BSNT_03430___ 126 TATTATTGCCATTCTGATT-TACGGACCTTTGG----CGGGTATTGCCGT 170
|.||||| || |||||.|| || |||| ||||||||
BL05240 144 TGTTATT----------TTGTACGGTCC---GGGAGCCGGG-ATTGCCGT 179
BSNT_03430___ 171 AGAAGCGATAAAAAATGTTCCTCAGTATATCATT-CAGGGAAGCATGGCC 219
.||||||||.|||||.||.|...|.||..|.||| || |||||| |||
BL05240 180 TGAAGCGATCAAAAACGTGCTGAATTACTTTATTGCA-GGAAGC---GCC 225
BSNT_03430___ 220 ---GGAGTTCCTGTAGGGCAAGTTGCGAATTTTATTGCAGGAACACTCTT 266
||.|||||..|.|..||.|..||.||.||.|||||.||||||.|.||
BL05240 226 TCGGGCGTTCCGATTGATCAGGCGGCTAACTTCATTGCCGGAACATTGTT 275
BSNT_03430___ 267 TATATTGCCGACTGCTTTCTTATTTAAAAAACTCAA-CTCAG-CAAAGGG 314
|||..|||||.|.|||.|..|..|.|||||| |||| .||.| |||||||
BL05240 276 TATCCTGCCGGCAGCTGTACTGCTGAAAAAA-TCAAGTTCTGCCAAAGGG 324
BSNT_03430___ 315 CTTGGCTGTCAGCCTGCTTTT----GGGAACTGC-AGCGATGACCATTTT 359
.||| |..|||| .||||| |||| .|| .|.||||.||.|||.
BL05240 325 TTTG--TCACAGC--TCTTTTCGCAGGGA--CGCTTGTGATGGCCGTTTC 368
BSNT_03430___ 360 AATGAGTATTTTAAATTATGTTCTGATTCTTCCGGCATACACGTGGTTTT 409
.|||||.||||||||||||.|.|||.||||.||.||.|||||.|||||||
BL05240 369 GATGAGCATTTTAAATTATCTGCTGTTTCTGCCTGCCTACACTTGGTTTT 418
BSNT_03430___ 410 TACATTCACCGGCATTATCCGAC-----AGCGCGCTAAAAACAGCAGTCG 454
||.||.|.||.|| .|.||| || |||||.||.|||.||||..
BL05240 419 TAAATGCTCCAGC----GCTGACTGGAGAG-GCGCTCAAGACAACAGTTC 463
BSNT_03430___ 455 TCGCAGGTATCCTCCCGTTTAACATGATAAAAGGTAT---TGTAATTACG 501
|.||.||.|||||.||.|||||..|.||.|||||.|| ||| |
BL05240 464 TGGCCGGAATCCTGCCTTTTAATTTCATTAAAGGCATCGCTGT------G 507
BSNT_03430___ 502 G---TTGTATTCTCACTAATTTT--TATCAAGCTTAAGCCATGGATTGAG 546
| |.||.|.|.|.|..||||| |.|| |||.||.||..||.|..||
BL05240 508 GCCCTCGTGTCCACGCCGATTTTCCTTTC--GCTGAAACCGCGGCTGAAG 555
BSNT_03430___ 547 CAGCAGCGAA---GTGCACATATCC-ATTAA 573
||| ||.|.|||..|| |.|||
BL05240 556 -------GAAAACGTCCGCATGGCCAAATAA 579
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