Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03303 and BL05236
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03303.1.5803.seq
# -bsequence dna-align/BL05236___ypsA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03303-BL05236___ypsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03303-BL05236___ypsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03303
# 2: BL05236___ypsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 663
# Identity: 410/663 (61.8%)
# Similarity: 410/663 (61.8%)
# Gaps: 141/663 (21.3%)
# Score: 1415.0
#
#
#=======================================
BSNT_03303 1 ATGGAAAACGTGCAGCTTGATGGTGTAAACAATGCAGCACAACAAATGGG 50
BL05236___yps 0 -------------------------------------------------- 0
BSNT_03303 51 GCCCACGGGAGCCCCATTTTTTAAAGCAGGTGAAATGATGAAAGTATTGG 100
|||||||||||||
BL05236___yps 1 -------------------------------------ATGAAAGTATTGG 13
BSNT_03303 101 CAATAACGGGCTATAAACCGTTTGAACTGGGGATATTTAAGCAGGATGAC 150
|..|.||.||.||.||.|||||||||||.|||||.||.||.||.||||||
BL05236___yps 14 CCGTTACAGGGTACAAGCCGTTTGAACTCGGGATTTTCAAACACGATGAC 63
BSNT_03303 151 AAGGCGCTGTATTACATAAAAAAAGCCATTAAGAACCGGCTGATTGCTTT 200
|||||.||||..||||||||||||||..||.|.||||||.||||.|||.|
BL05236___yps 64 AAGGCCCTGTTCTACATAAAAAAAGCGCTTGAAAACCGGATGATCGCTCT 113
BSNT_03303 201 TTTGGATGAAGGATTAGAATGGATTTTAATTTCGGGCCAGCTTGGAGTTG 250
..|.||.|||||..|.||||||.|..|.||.|||||||||||.||...||
BL05236___yps 114 CCTTGAGGAAGGCCTGGAATGGGTCCTTATCTCGGGCCAGCTCGGGACTG 163
BSNT_03303 251 AGCTGTGGGCGGCAGAAGTTGCATATGATT----TGCAGGAGGAATACCC 296
|.||.||||||||.|||||.|| |.|| |||||||.||||..||
BL05236___yps 164 AACTATGGGCGGCGGAAGTCGC----GTTTTCGCTGCAGGAAGAATTTCC 209
BSNT_03303 297 TGACTTAAAGGTAGCTGTCATCACACCATTTTACGAGCAGGAAAAGAACT 346
.|||||.||.||.||.||||||||.||.||||..||.|||||||||||.|
BL05236___yps 210 CGACTTGAAAGTGGCGGTCATCACTCCGTTTTTGGAACAGGAAAAGAAGT 259
BSNT_03303 347 GGA--AAGAACCGAATAAGGAACAGTATGAAGCAGTTCTGGCTCAGGCAG 394
||| .|||| .|||.|.||.|||||||||||.||.|| |.|||.|||
BL05236___yps 260 GGAGCGAGAA--AAATCAAGAGCAGTATGAAGCCGTGCT--CGCAGCCAG 305
BSNT_03303 395 -------ACTATGAAGCAAGCCTGACTCACCGTCCTTATGAAAGCCCGCT 437
||| |.||||.||||.|||.|.||.||.|||||||||.|
BL05236___yps 306 CGATTTCACT-----GAAAGCTTGACACACAGGCCGTACGAAAGCCCGGT 350
BSNT_03303 438 TCAATTCAAACAAAAAAATCAGTTCTTCATTGATAAGTCCGACGGGCTT- 486
.|||||||||||||||||.|.|||||||||.||.|||.|.|| .|||||
BL05236___yps 351 GCAATTCAAACAAAAAAACCGGTTCTTCATCGAAAAGGCGGA-TGGCTTA 399
BSNT_03303 487 CTGCTTTTATATGACCTG--GAAAAGGAAGGCTCCCCTAAGTATATGCT- 533
.||.||.|.||.|| || ||||..||||||||.|||..|||||||||
BL05236___yps 400 TTGATTCTGTACGA--TGAAGAAATCGAAGGCTCGCCTGTGTATATGCTG 447
BSNT_03303 534 --TGGGTCAGCGGAAAAAAGGCGC-----GAACAGGATGGCTATCCCATC 576
|| .||| |||||||||.| .|||..||| |.|||.|||
BL05236___yps 448 AATG---AAGC--AAAAAAGGCTCAGGAAAAACGCGAT---TTTCCGATC 489
BSNT_03303 577 TACTTTATTACAATGGATGACTTGAGAGTGACAGTAGAGGAAGACAGC-- 624
|||...|||||.|||||||||||||||||.||.||.||.|||..||||
BL05236___yps 490 TACACGATTACGATGGATGACTTGAGAGTCACTGTTGAAGAATGCAGCTT 539
BSNT_03303 625 -TACTCATAG--- 633
|||..|.||
BL05236___yps 540 TTACGAAGAGTAA 552
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