Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03301 and BL05234
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03301___ypsC.1.5803.seq
# -bsequence dna-align/BL05234___ypsC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03301___ypsC-BL05234___ypsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03301___ypsC-BL05234___ypsC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03301___ypsC
# 2: BL05234___ypsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1185
# Identity: 862/1185 (72.7%)
# Similarity: 862/1185 (72.7%)
# Gaps: 60/1185 ( 5.1%)
# Score: 3033.5
#
#
#=======================================
BSNT_03301___ 1 ATGAAGAAGTATACACTAATTGCAACGGCGCCGATGGGCATTGAAGCTGT 50
|||||.|..||||||.||||.|||||.|||||||||||.||||||||..|
BL05234___yps 1 ATGAAAACCTATACATTAATCGCAACAGCGCCGATGGGAATTGAAGCGAT 50
BSNT_03301___ 51 TGTCGCAAAGGAAGTACGAGATTTAGGATACGAATGCAAGGTTGATAACG 100
.|||||.||.||.||.||.||..|.|||||.||.||.|..|||||.||||
BL05234___yps 51 CGTCGCCAAAGAGGTGCGCGACCTTGGATATGATTGTACAGTTGACAACG 100
BSNT_03301___ 101 GGAAAGTTATTTTTGAAGGTGATGCACTTGCCATCTGCCGTGCGAACCTT 150
|.|||||..|.||||||||.|||||.||.|||||||||.|.||.||.||.
BL05234___yps 101 GTAAAGTCGTGTTTGAAGGCGATGCCCTCGCCATCTGCAGAGCCAATCTG 150
BSNT_03301___ 151 TGGCTTAGAACAGCCGACCGCATAAAGGTTCAGGTTGCTTCTTTTAAAGC 200
|||||.|||||.||.|||.|..|.||.||.||||.|||....||||.|||
BL05234___yps 151 TGGCTGAGAACCGCTGACAGGGTGAAAGTGCAGGCTGCCGAATTTATAGC 200
BSNT_03301___ 201 GAAAACATTTGATGAACTGTTTGAAAAAACGAAAGCGATTAACTGGCGCT 250
.||.||.|||||.||.||.|||||.||.||.||||||||..|||||.||.
BL05234___yps 201 CAAGACCTTTGACGAGCTATTTGAGAAGACAAAAGCGATCGACTGGAGCG 250
BSNT_03301___ 251 CATTTATACCTGAAAACGGGAAATTCCCTGTCATCGGAAAATCGGTAAAA 300
|.|.|.|.||||||.|||.|..||||||.||.|..|||||.||.||.|||
BL05234___yps 251 CCTATCTTCCTGAACACGCGTCATTCCCCGTGACGGGAAAGTCTGTTAAA 300
BSNT_03301___ 301 TCAACACTTGCAAGCGTCCCCGACTGTCAGCGGATCGTCAAAAAAGCAAT 350
|||...||.||||||||.||.|||||.|||||.||||||||||||||.||
BL05234___yps 301 TCAGTGCTCGCAAGCGTGCCGGACTGCCAGCGCATCGTCAAAAAAGCGAT 350
BSNT_03301___ 351 TGTTGAAAAGCTCAAGCTGCAG----TCCGGCAAA--GCCAATGATTGGA 394
.|..||.|||||.|| ..||| ||.|.||.| || ||.|||.
BL05234___yps 351 CGCCGAGAAGCTGAA--ATCAGAATATCAGACACAGGGC----GAGTGGC 394
BSNT_03301___ 395 TTGAAGAAACAGGTGCC-GAGTATAAAGTGGAAATTTCTTTATTGAAAGA 443
||||.|||||||| ||| ||.||.|||.|.|||.|.|||.|.||.|||||
BL05234___yps 395 TTGAGGAAACAGG-GCCGGAATACAAAATTGAAGTCTCTCTTTTAAAAGA 443
BSNT_03301___ 444 TCAGGCTCTGATTACACTGGACTCATCAGG-GACGGGCCTTCACAAACGA 492
..|.||..|.||.||.||.||.|||||.|| |.|||| |||||.|||||.
BL05234___yps 444 CAAAGCGGTCATAACGCTTGATTCATCCGGAGCCGGG-CTTCATAAACGG 492
BSNT_03301___ 493 GGATACCGTGTCGATCAGGGCGGTGCGCCGATTAAAGAAACACTTGCTGC 542
|||||.||...||..||.||.|..||||||.|.||||||||.||||||||
BL05234___yps 493 GGATATCGAACCGGCCAAGGGGAAGCGCCGCTGAAAGAAACCCTTGCTGC 542
BSNT_03301___ 543 CGCTTTGGTGCAATTAACCAATTGGACGCCGGACCGCCCGTTTGTTGATC 592
.||||||.|.|.|||.||.|||||||||||.|||.|.||.||.||.||||
BL05234___yps 543 AGCTTTGATTCTATTGACAAATTGGACGCCTGACAGGCCTTTCGTCGATC 592
BSNT_03301___ 593 CTTTCTGCGGCTCCGGAACAATCGCGATAGAAGCGGCGCTAATCGGCCAA 642
|.||.|||||.||.||.||.||..||||.|||||.||..|.|||||||||
BL05234___yps 593 CGTTTTGCGGTTCGGGTACGATACCGATCGAAGCCGCTTTGATCGGCCAA 642
BSNT_03301___ 643 AACATCGCCCCGGGATTCAACCGCGATTTTGTATCAG-AGGATTGGGAAT 691
||.|||||||||||.||||||.|.|||||||.|||.| |.|| |||||||
BL05234___yps 643 AATATCGCCCCGGGTTTCAACAGGGATTTTGCATCTGAAAGA-TGGGAAT 691
BSNT_03301___ 692 GGATCGGTAAAGATCTGTGGAACAAAGCGCGGCTTGAAGTCGAAGAAAAG 741
|||||||||||||..|||||.|..|||||.||||.||||||||||||||.
BL05234___yps 692 GGATCGGTAAAGAAGTGTGGGATCAAGCGAGGCTGGAAGTCGAAGAAAAA 741
BSNT_03301___ 742 GCAAATTATGATCAGCCGCTTACAATTTTCGCTAG-----CGACATAGAC 786
||.||||||||||||||||||.|||| ||.| .|||.|.||.
BL05234___yps 742 GCGAATTATGATCAGCCGCTTTCAAT-----CTCGGGGTATGACCTGGAT 786
BSNT_03301___ 787 CACCGCATGGTTCAAATCGCAAAAGAAAATGCAGAGGAAGCAGGATTGGG 836
||.||||||.|..|||||||.||.|.|||.||.||||||||.|||.|.|.
BL05234___yps 787 CATCGCATGATCGAAATCGCCAAGGCAAACGCCGAGGAAGCTGGACTCGC 836
BSNT_03301___ 837 AGATTTAATCCAGTTTAAGCAGATGCAGGTCAAAGACTTTACCACAAATC 886
.|||||.|||.|.||||||||.||||||||.||.||.|||...||.||..
BL05234___yps 837 CGATTTCATCGAATTTAAGCAAATGCAGGTAAAGGATTTTCGGACGAAAG 886
BSNT_03301___ 887 TGGAGTTTGGCGTAATTGTCGGCAACCCGCCATATGGAGAGCGTCTCGGC 936
.|||.|..||||||||||||||.||.|||||.||.||.||.||.|||||.
BL05234___yps 887 AGGAATACGGCGTAATTGTCGGAAATCCGCCGTACGGGGAACGCCTCGGT 936
BSNT_03301___ 937 GAGAAAAAAGCCGTTGAGCAG--ATGTACAAAGAAATGGGGCAGGCGTT- 983
||.||.|||||.||.|| || |||||.||.||.|||||..|.||.||
BL05234___yps 937 GAAAAGAAAGCAGTCGA--AGCCATGTATAAGGATATGGGCAAAGCATTT 984
BSNT_03301___ 984 --CGAGCCGCTTGATACTTGGTCTGTGTATATGCTGACATCAAATGAAAA 1031
||| |||||||||.||||||||.||.||||||||||||||.||...
BL05234___yps 985 GCCGA---GCTTGATACATGGTCTGTCTACATGCTGACATCAAACGAGCG 1031
BSNT_03301___ 1032 CTTTGAGGA-AGCATATGGCAGAAAAGCAACGAAGAAACGAAAACTCTTT 1080
.|||||.|| .|| ||.||.|.||||||||||||.|||||.||.||||||
BL05234___yps 1032 TTTTGAAGAGTGC-TACGGGAAAAAAGCAACGAAAAAACGGAAGCTCTTT 1080
BSNT_03301___ 1081 AACGGGTTTATTAAAACGGATTATTATCAATACTGGTCAAAAGTAAGGCC 1130
|||||.||||||||.|||||.|||||.||.||.|||...|| ||||||
BL05234___yps 1081 AACGGTTTTATTAAGACGGACTATTACCAGTATTGGGGGAA---AAGGCC 1127
BSNT_03301___ 1131 GC----AGCG---TAAGAAAACAGAAAACGCATAA 1158
|| |.|| .|||||||..||
BL05234___yps 1128 GCCAAAACCGAACAAAGAAAAGTGA---------- 1152
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