Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03271 and BL05227
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:56
# Commandline: needle
# -asequence dna-align/BSNT_03271___degR.1.5803.seq
# -bsequence dna-align/BL05227___degR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03271___degR-BL05227___degR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03271___degR-BL05227___degR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03271___degR
# 2: BL05227___degR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 193
# Identity: 128/193 (66.3%)
# Similarity: 128/193 (66.3%)
# Gaps: 20/193 (10.4%)
# Score: 402.5
#
#
#=======================================
BSNT_03271___ 1 ATGGATGATAAAGACTTGAA---------GTTGATCCTTCACAAAACATT 41
.||| ||||...|||| ||| ||||||||.|||||
BL05227___deg 1 GTGG-----AAAGCAATGAACTGCAAACCGTT----CTTCACAAGACATT 41
BSNT_03271___ 42 TATAGAAATATACAGTGATTTAGAAGAACTGGCGGATATCGCGAAAAAAG 91
|.|.||..||||.|..|||.|.|||.|.||.|..||||||||.|||||.|
BL05227___deg 42 TGTGGAGGTATATAAAGATCTTGAACAGCTCGTTGATATCGCTAAAAAGG 91
BSNT_03271___ 92 GAAAACCATCAATGGAAAAGTATGTTGAAGAGATTGAACAGAGG-TGTAA 140
|....|||||..|.||.|||.|..||||.||.||.||.||.||| || ||
BL05227___deg 92 GGCGTCCATCTCTCGAGAAGAACATTGAGGAAATCGAGCAAAGGCTG-AA 140
BSNT_03271___ 141 ACAAAACATTTTGGCGATTGAAATCCAGATGAAAATCAAATAG 183
.|||||.||..|||||||.|||||.|||.|||||||.||||||
BL05227___deg 141 GCAAAATATACTGGCGATCGAAATTCAGCTGAAAATTAAATAG 183
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