Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03245 and BL05223

See Amino acid alignment / Visit BSNT_03245 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_03245___ypmP.1.5803.seq
#    -bsequence dna-align/BL05223___ypmP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03245___ypmP-BL05223___ypmP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03245___ypmP-BL05223___ypmP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03245___ypmP
# 2: BL05223___ypmP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 272
# Identity:     174/272 (64.0%)
# Similarity:   174/272 (64.0%)
# Gaps:          40/272 (14.7%)
# Score: 475.5
# 
#
#=======================================

BSNT_03245___      1 TTGTTACTCAAAAGCCTAGAGTTCAAACG--CGATGACGG---GATTCAG     45
                     ||||||||.||||||||.|||||||||||  ||  ||.||   ||   ||
BL05223___ypm      1 TTGTTACTTAAAAGCCTGGAGTTCAAACGTTCG--GATGGACAGA---AG     45

BSNT_03245___     46 GTGAAAGTGACAGAAATACCTGTATTAAAGGAAGATGAGCACTATTTCTT     95
                     |||||.|||||.|||||||||.|..|.|||||.||.||.|...||||.||
BL05223___ypm     46 GTGAAGGTGACGGAAATACCTCTGCTGAAGGAGGACGACCCGCATTTTTT     95

BSNT_03245___     96 TATGTTACATCACCA--------TTTGCAATTCTACTTAAAAGAAG-TGT    136
                     ||||       .|||        .|||.|||..|  ||.|||||.| |.|
BL05223___ypm     96 TATG-------GCCAATCTGAGGCTTGAAATCTT--TTTAAAGACGCTCT    136

BSNT_03245___    137 TTTCATCAAACAGCAGGGCAAAA----GTGTATTCTTTCCGACATTATAT    182
                     .||..||||  |||  ||.||||    ||.||.||.||..|..|.||..|
BL05223___ypm    137 ATTGCTCAA--AGC--GGAAAAAAAACGTCTACTCCTTTAGGGACTACTT    182

BSNT_03245___    183 GAAGCGCCGGA-TGAAGTGGGCA-GATTATCAGGCTGTATTTCATCAAGA    230
                     .|||.| .|.| ||||.| |||| |||||.|.|||..|.|.|||.||.||
BL05223___ypm    183 AAAGAG-AGCATTGAAAT-GGCAGGATTACCTGGCCATTTATCAACATGA    230

BSNT_03245___    231 GGTGTTAAAGCACAACGCGTAA    252
                     .|..||.|||||.||.||.|||
BL05223___ypm    231 TGAATTGAAGCATAATGCATAA    252


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