Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03240 and BL05222
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03240___ypmT.1.5803.seq
# -bsequence dna-align/BL05222___ypmT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03240___ypmT-BL05222___ypmT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03240___ypmT-BL05222___ypmT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03240___ypmT
# 2: BL05222___ypmT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 218
# Identity: 134/218 (61.5%)
# Similarity: 134/218 (61.5%)
# Gaps: 40/218 (18.3%)
# Score: 387.0
#
#
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BSNT_03240___ 1 ATGAAACGGATTTAC-CAGTATTTCAGTTTATTATCCTTTACATTTTCCC 49
|||.||||.||.||| || ||||||||.||.||.||..|....|||||.|
BL05222___ypm 1 ATGGAACGTATCTACACA-TATTTCAGCTTGTTGTCTATGTTGTTTTCAC 49
BSNT_03240___ 50 TGTACTTCGGCTGGCTTG----CTTATCATCA-TCTGGCTGCTGAAGACA 94
|||||||||||.|.||.| || ||| |.|.|.||.||||.|||
BL05222___ypm 50 TGTACTTCGGCGGTCTCGCCGCCT-----TCAGTTTCGTTGATGAAAACA 94
BSNT_03240___ 95 TGGATCAA-ATGTATTTGAATGTTTCCTATTGTGCCTTGTTCCTGAGTGT 143
|||| ||| |||||||||||..|....||||||||.|||||..|.||..|
BL05222___ypm 95 TGGA-CAAGATGTATTTGAACATCGGGTATTGTGCGTTGTTTTTAAGCAT 143
BSNT_03240___ 144 GATGGTGTTTACATTCGGTATGCGAGACCGAAAAAAACCCGATAAGTCAT 193
.|||.|.||||| ||...|||| ||||||||.|.|.||..| |
BL05222___ypm 144 TATGATTTTTAC--TCTTGATGC-------AAAAAAACACAAAAAAAC-T 183
BSNT_03240___ 194 GA---------------- 195
||
BL05222___ypm 184 GACCATCACAATCAATAA 201
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