Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03184 and BL05217
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_03184.1.5803.seq
# -bsequence dna-align/BL05217.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03184-BL05217.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03184-BL05217.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03184
# 2: BL05217
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity: 525/929 (56.5%)
# Similarity: 525/929 (56.5%)
# Gaps: 196/929 (21.1%)
# Score: 1264.0
#
#
#=======================================
BSNT_03184 1 -------------------------------ATGACCGTGCAG------- 12
|.||.|...|||
BL05217 1 TTGGAGCCACGAGTCATTGTCCAAGTTGTAGAAGAACTCTCAGCCACTTT 50
BSNT_03184 13 ---GATATCTG-TATTCAT------TTAGGTATCTCTCGCTCGTCTTATT 52
.|||..|| |||||.| |||||.||..||...||..|.||||
BL05217 51 TAAAATAATTGATATTCTTGGAGTATTAGGCATACCTAAGTCAACATATT 100
BSNT_03184 53 ATCGTTGGAAGAAGAA-TCTGAAGAAAGATCATCCCAAGCGCCATTTAGA 101
|.||||||||.||||| |.| ||.||||.|.| .|.|.|..|| |||||
BL05217 101 ACCGTTGGAAAAAGAAGTAT-AAAAAAGTTGA--GCTAACTTCA-TTAGA 146
BSNT_03184 102 AAAACAAATCGGCACGTTGTGCCGAG-AGCACCAGTATCGATATGGATAT 150
|.|.|.|.|...||.|.|||| ..|| |..||...||||..|||||..||
BL05217 147 AGAGCTAGTAATCAAGCTGTG-TAAGAAAAACTTCTATCACTATGGTCAT 195
BSNT_03184 151 CGAAAAATCACAGCTATATTAAA-AAAGAGAATG-------TGTATTAAC 192
||.|||||.|.|.|.||.||||| |.|.||.||| |||| |||
BL05217 196 CGTAAAATTAAATCCATCTTAAACAGAAAGTATGGGATAAATGTA--AAC 243
BSNT_03184 193 CATAAAACGGTTCAGCGTATTATGCAGAAA-------AATCAGTGGCAGT 235
|..|||||.||.||....|||||||| ||| |.||||||.||
BL05217 244 CGCAAAACTGTACAAAAAATTATGCA-AAAGTTTGAGATTCAGTGTCA-- 290
BSNT_03184 236 GCCGGGTTAAGGTGAAAAAGCG-CAAGAAGAATGGGCAGCCATATGCCGT 284
.||||| |||.||||| ||| |||.| |||.| ||
BL05217 291 ----AGTTAA---GAAGAAGCGACAA-AAGTA--------CATTT---GT 321
BSNT_03184 285 GGTCGACAAT-ATATTAGATAG----GA--ACTTTCAGTC-TGAT----- 321
||| ||.|.| ||||| ||.| || |||.|||.|| |.||
BL05217 322 GGT-GAGAGTAATATT--ATTGTGCCGAACACTCTCAATCGTAATTTTAA 368
BSNT_03184 322 ---CATCCTCT----TGAAAAACTAGTAACAGACATCACGTATTTGCCTT 364
.|.||..| |||||||...|||||.|||||.||.||.||.||||
BL05217 369 AGCAAGCCGATTAAATGAAAAATGGGTAACCGACATTACCTACTTACCTT 418
BSNT_03184 365 ATGGACAGAAACAA--TTGTACCTTTCCAGTATATTGGATGTATATAATG 412
||||...| ||.| ||.||..|.||.|..||..||||..|||||||..
BL05217 419 ATGGCTCG--ACTATGTTATATTTATCAACGATTATGGACTTATATAACA 466
BSNT_03184 413 GAGAAGTGATTGCTTTTACGATTGGAGATAAG---CAGGACACAGACTTT 459
..|||.|..|.||||..|..|| ||.||.| ||.||.|...||.|.
BL05217 467 ACGAAATAGTGGCTTACAAAAT---AGGTACGAGCCAAGATATTAACCTA 513
BSNT_03184 460 GTCTTACACACACTTGATCAACTGCCAACACTGCCTG-AGAACTGCGT-- 506
||.|||.||||| |||| |..|| .||| ||||.|.|||
BL05217 514 GTATTAGACACA-TTGA------GGGAA-----GCTGTAGAATTACGTAA 551
BSNT_03184 507 ---------GTTA------CATAGTGACCAAGGATCTGTGTATACATCTT 541
|||| |||||.|||||.||||||||.|||||.||..
BL05217 552 ACCAGTAGGGTTACTTCTTCATAGCGACCAGGGATCTGTCTATACTTCAC 601
BSNT_03184 542 ACGAGTATCAGAAAGCTGTT-----AAAACAAAAGGCATTACCATGAGCA 586
|.|..|||||||| || |||..||||||||||||||..||||
BL05217 602 ATGCATATCAGAA-----TTTGGCCAAAGAAAAAGGCATTACCACAAGCA 646
BSNT_03184 587 TGTCCCGCAAAGGGACACCCGC--TGATAATGCCTCCATCGAATCGTTTC 634
||||.||.||||| .|.|.|| ||||||||||..|||.|||||.||||
BL05217 647 TGTCTCGAAAAGG--AAACTGCCATGATAATGCCGTCATTGAATCCTTTC 694
BSNT_03184 635 ATTCCTCACTAAAGTCTGA-------AACGTTCTATCTTAACAGCATTGA 677
|.|||||.||||||||.|| ||||.||.|..| |.|||||..|
BL05217 695 ACTCCTCGCTAAAGTCGGAAGGATTTAACGCTCAAAGT--AGAGCATCTA 742
BSNT_03184 678 TCGAACCACGACCGCCAT-----CGTAGAACGCACTGTCATAGAATACAT 722
| |.||| || .||||.||..|.|||.|...|||||||
BL05217 743 T--ATCCA--------ATTCTAAAGTAGTACAAATTGTAAATCAATACAT 782
BSNT_03184 723 TCATTATTATAACAATATTCGTATTCAAACGAAACTAAACAACCAATCAC 772
..||...|||||..||.|.||.|||||..|.|||.|||||.|||..||.|
BL05217 783 GTATCGATATAATCATGTACGAATTCAGGCAAAATTAAACTACCTGTCCC 832
BSNT_03184 773 CGATAAATTATCGGCAATTGGCTGTTTAA 801
|..|..|.||..||..|..|||.|..||.
BL05217 833 CACTGGAATACAGGGGACAGGCAGCATAG 861
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