Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03912 and BL05170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_03912___yraE.1.5803.seq
# -bsequence dna-align/BL05170___yraE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03912___yraE-BL05170___yraE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03912___yraE-BL05170___yraE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03912___yraE
# 2: BL05170___yraE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 231
# Identity: 127/231 (55.0%)
# Similarity: 127/231 (55.0%)
# Gaps: 63/231 (27.3%)
# Score: 278.5
#
#
#=======================================
BSNT_03912___ 1 ATGGAAT-ACGCCTTACATGAA---------GTGCTTGAG--GTTCAGGA 38
|.|||| |.||..|.|||||| .|||.|||| |||
BL05170___yra 1 -TTGAATAATGCGATCCATGAAACATTGGAGCTGCATGAGCTGTT----- 44
BSNT_03912___ 39 AATGACTGCTTTTAAGACACTTTGTTTGACGAAATCTAAAACAATGAAAG 88
|||| |||||.|..||||||.||||.||.||...||||||||..|
BL05170___yra 45 AATG------TTTAAAAACCTTTGTCTGACAAAGTCATCAACAATGACGG 88
BSNT_03912___ 89 CACTGGTATC-TGATCCGAAGCTTAAAGAAATCATGCAGCAAGACGTTGA 137
.|.|||| || .||||...|||||...||.|||.||.|||..||.|
BL05170___yra 89 GAATGGT-TCAGGATCAAGAGCTTCGCGACATCTTGGAGCGTGATG---- 133
BSNT_03912___ 138 CATCACC--ACACGGCAGCTGCAGGAGTTCGCCTCTA--TTTTA-----T 178
|||| || |||..|||.| ||.||| | .|||| |
BL05170___yra 134 CATC-CCAAACAAAGCATC------AGATCG-----AGCATTTACAAGGT 171
BSNT_03912___ 179 CTAATG-CA----------AAGCACGAATGA 198
|||.|| || ||.| ||.||||
BL05170___yra 172 CTATTGTCAGTGAGAGGTGAAAC-CGTATGA 201
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