Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03826 and BL05169
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:53
# Commandline: needle
# -asequence dna-align/BSNT_03826___yqeD.1.5803.seq
# -bsequence dna-align/BL05169___yqeD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03826___yqeD-BL05169___yqeD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03826___yqeD-BL05169___yqeD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03826___yqeD
# 2: BL05169___yqeD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 683
# Identity: 422/683 (61.8%)
# Similarity: 422/683 (61.8%)
# Gaps: 88/683 (12.9%)
# Score: 1237.5
#
#
#=======================================
BSNT_03826___ 1 ATGTTAAAAAAAGTAATAGGTATCCTTGTGATTATCGC---TATCATTGC 47
|||.|.|.||||.||.|...|||| .|.||.||.|| ||||||.||
BL05169___yqe 1 ATGATCAGAAAACTATTCACTATC---ATCATCATGGCAAGTATCATCGC 47
BSNT_03826___ 48 AGTCGGTTT--TTTTCAGAAAGAAGCTTGGCTTGATGCAATCAAAGCAGG 95
.|||||.|| |.|.| |||||..|.|||||.||.|..||||..|..||
BL05169___yqe 48 GGTCGGATTCGTCTGC--AAAGATTCCTGGCTCGACGTCATCAGGGACGG 95
BSNT_03826___ 96 AGGGATGTTTTCCGTTTTATTTAGTATGCTGCTGATTGCTGCCGATGTTT 145
|||..|.|.|||.||.|||||.||.||||||||..|.||.|||..|||.|
BL05169___yqe 96 AGGCGTTTATTCGGTATTATTCAGCATGCTGCTTGTGGCGGCCTGTGTAT 145
BSNT_03826___ 146 TTTTCCCAATAGTGCCGTTTGCTTTGGTTGCTGCTTTAAATGGCGCAGTG 195
|||||||.||.||.||||||||..|..||||.|..|||||.|||||..||
BL05169___yqe 146 TTTTCCCGATCGTCCCGTTTGCGCTCATTGCCGGATTAAACGGCGCCTTG 195
BSNT_03826___ 196 TTCGGGACTGCAAATGGAATTTGGATTACACTGACCGGCTCAATGCTTGG 245
|||||.|..|||||.||..|...|||.||.|||||.||.||.|||||.||
BL05169___yqe 196 TTCGGAATCGCAAACGGCGTGCTGATCACGCTGACGGGGTCTATGCTCGG 245
BSNT_03826___ 246 TACTATATTGCTGTTTTTTCTCGCCAGGTACAGTTTTAGAGATTGGGC-- 293
.||.||..|..|||||||.|||.|..|.|||.|.||.|||||...|||
BL05169___yqe 246 CACCATGCTCTTGTTTTTCCTCTCACGTTACGGATTCAGAGACATGGCTC 295
BSNT_03826___ 294 -CAGAAA-------AAAAGTTCAGGCCTACCCTGCCATACAA--AGC--- 330
||||.| ||| ||||| .|.|| |||
BL05169___yqe 296 GCAGACACTTAACGAAA----------TACCC-----GAAAATGAGCGAA 330
BSNT_03826___ 331 TACGAGGCTTCCTTCAACAAAAACGCTTTTACCGCTGTTTTATTAGGAAG 380
||.||.||.|..||.|||.||||.||||||||.||.||..||||.||.||
BL05169___yqe 331 TATGAAGCGTATTTTAACCAAAATGCTTTTACAGCCGTACTATTGGGCAG 380
BSNT_03826___ 381 GCTGATACCAGTCATACCTTCCCTTATAATGAATGTGATCTGCGGTCTGA 430
||||||.||.||.||.||..||.||.|.||||||.|..||||||||.|.|
BL05169___yqe 381 GCTGATCCCGGTTATCCCAGCCGTTGTCATGAATATCGTCTGCGGTTTAA 430
BSNT_03826___ 431 GCCAAGTTCGCTGGCATGTTTTTTTCTTTGCGTCTTTAA---TAGGGAAA 477
||.|.||....|||..|||.||| ||||||.|||..| |.||.|||
BL05169___yqe 431 GCAAGGTGAAATGGGCTGTCTTT---TTTGCGGCTTCGACGCTTGGAAAA 477
BSNT_03826___ 478 ATCCCCAATATTGTTGTTGTCACTATTGCAGGCGCCAACTTCACCAGCAA 527
.|||||||..||.|.||.|||.||||.|||||.|||||.||||.|...||
BL05169___yqe 478 GTCCCCAACGTTCTCGTCGTCTCTATCGCAGGTGCCAATTTCAGCGAAAA 527
BSNT_03826___ 528 TAAATTATTGTCTATCAGCATTTACGGTGCATATATTCTGATCATCATGC 577
.||..|..|.|||.||.||.|.|||||...||||||...||||||...|.
BL05169___yqe 528 CAAGCTGCTCTCTGTCGGCGTCTACGGCTTATATATGGCGATCATAGCGT 577
BSNT_03826___ 578 TGGTCATTTATAAAAAGT-TCCCTCATCT-TCTAAAGGTGCCAAAAAAAT 625
|.|||||.||.|.||||| |||| ||||| .|| ||||||.||
BL05169___yqe 578 TTGTCATCTACAGAAAGTATCCC-CATCTGACT--------CAAAAACAT 618
BSNT_03826___ 626 AA------------------------------- 627
||
BL05169___yqe 619 AAAGAGACGAAACAGACAGGGAAGCCTTCTTGA 651
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