Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02618 and BL05160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:18
# Commandline: needle
# -asequence dna-align/BSNT_02618___rimM.1.5803.seq
# -bsequence dna-align/BL05160___rimM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02618___rimM-BL05160___rimM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02618___rimM-BL05160___rimM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02618___rimM
# 2: BL05160___rimM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 532
# Identity: 381/532 (71.6%)
# Similarity: 381/532 (71.6%)
# Gaps: 14/532 ( 2.6%)
# Score: 1274.0
#
#
#=======================================
BSNT_02618___ 1 ATGACAAAGCGATGGTTTAACGTAGGCAAAATCGTAAATACCCACGGAAT 50
|||...||.|.|||||||||.|||||.|||||.||.|||||.||.||..|
BL05160___rim 1 ATGCTGAAACAATGGTTTAATGTAGGGAAAATTGTTAATACTCATGGGGT 50
BSNT_02618___ 51 CAAAGGCGAAGTGCGGGTGATTTCAAAAACAGATTTTGCCGAAGAACGAT 100
.|||||||||||.||.||.|||||||.|||.||||||.|.||.||.||.|
BL05160___rim 51 AAAAGGCGAAGTCCGCGTCATTTCAAGAACCGATTTTCCTGAGGAGCGGT 100
BSNT_02618___ 101 ACAAGCCGGGAAACACGCTGTATTTGTTTATGGACGGCCGTA----ACGA 146
|||||||.||||||.||||.||.||||||.||||.|| | ||||
BL05160___rim 101 ACAAGCCCGGAAACGCGCTCTACTTGTTTCTGGAAGG----AAAAGACGA 146
BSNT_02618___ 147 ACCAGTGGAGGTAACGGTAAACACACATAGACTGCATAAGCAATTTCATC 196
.||.||..||||.||.||.|.|.|.||.||.||.||.||.||.||.||.|
BL05160___rim 147 GCCTGTCCAGGTGACCGTCAGCGCCCACAGGCTTCACAAACAGTTCCACC 196
BSNT_02618___ 197 TCCTGCAGTTTAAAGAAAGACAAAAC-CTAAATGAAGTAGAAGAGCTGAA 245
|..|||||||||||| |.|...|||| ||.|..||||..|||.|..|.||
BL05160___rim 197 TTTTGCAGTTTAAAG-AGGTTGAAACGCTCACCGAAGCCGAAAAATTAAA 245
BSNT_02618___ 246 AAACGCAATCATTAAAGTTCCTGAAGAAGAATTAGGAGAGCTGAATGAGG 295
.||.||..|.|||||||||||.|||||..|||||.|..||.||...||.|
BL05160___rim 246 GAATGCCTTGATTAAAGTTCCCGAAGACCAATTAAGCCAGTTGGCGGAAG 295
BSNT_02618___ 296 GTGAATTTTATTTCCACGAAATTATTGGGTGTGAAGTATTTACTGAAGAA 345
..||||..||.||.||||||||.||.||.||.||.||.||..|.|||||.
BL05160___rim 296 ACGAATACTACTTTCACGAAATCATCGGCTGCGATGTTTTCTCGGAAGAC 345
BSNT_02618___ 346 GGCGAACTCATCGGAAAGGTCAAAGAAATTTTGACGCCTGGAGCCAATGA 395
||.||..|.|||||.|||||.|||||||||||.|||||.||.|||||.||
BL05160___rim 346 GGGGATTTAATCGGCAAGGTGAAAGAAATTTTAACGCCGGGCGCCAACGA 395
BSNT_02618___ 396 CGTTTGGGTCATCGGAC-GAAAAGGAAAAAAAGACGCACTCATTCCTTAC 444
.||.||||||.| ||.| ||...|||||.||||||||.|||||.|||||.
BL05160___rim 396 TGTCTGGGTCGT-GGCCAGACCGGGAAAGAAAGACGCGCTCATCCCTTAT 444
BSNT_02618___ 445 ATTGAATCAGTGGTCAAACATATCGATGTCAG-GGAAAAGAAAATTGAGA 493
|||||..|.||.||||||.|.||..|.|| || |||.||.|..||..|||
BL05160___rim 445 ATTGACGCCGTTGTCAAAGAGATTAACGT-AGCGGATAAAACGATCAAGA 493
BSNT_02618___ 494 TTGAACTCATGGAAGGGTTAATAGACGAATGA 525
||.|..||||||||||.|||.|.|||||||||
BL05160___rim 494 TTCATATCATGGAAGGATTACTTGACGAATGA 525
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