Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02618 and BL05160

See Amino acid alignment / Visit BSNT_02618 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:18
# Commandline: needle
#    -asequence dna-align/BSNT_02618___rimM.1.5803.seq
#    -bsequence dna-align/BL05160___rimM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02618___rimM-BL05160___rimM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02618___rimM-BL05160___rimM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02618___rimM
# 2: BL05160___rimM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 532
# Identity:     381/532 (71.6%)
# Similarity:   381/532 (71.6%)
# Gaps:          14/532 ( 2.6%)
# Score: 1274.0
# 
#
#=======================================

BSNT_02618___      1 ATGACAAAGCGATGGTTTAACGTAGGCAAAATCGTAAATACCCACGGAAT     50
                     |||...||.|.|||||||||.|||||.|||||.||.|||||.||.||..|
BL05160___rim      1 ATGCTGAAACAATGGTTTAATGTAGGGAAAATTGTTAATACTCATGGGGT     50

BSNT_02618___     51 CAAAGGCGAAGTGCGGGTGATTTCAAAAACAGATTTTGCCGAAGAACGAT    100
                     .|||||||||||.||.||.|||||||.|||.||||||.|.||.||.||.|
BL05160___rim     51 AAAAGGCGAAGTCCGCGTCATTTCAAGAACCGATTTTCCTGAGGAGCGGT    100

BSNT_02618___    101 ACAAGCCGGGAAACACGCTGTATTTGTTTATGGACGGCCGTA----ACGA    146
                     |||||||.||||||.||||.||.||||||.||||.||    |    ||||
BL05160___rim    101 ACAAGCCCGGAAACGCGCTCTACTTGTTTCTGGAAGG----AAAAGACGA    146

BSNT_02618___    147 ACCAGTGGAGGTAACGGTAAACACACATAGACTGCATAAGCAATTTCATC    196
                     .||.||..||||.||.||.|.|.|.||.||.||.||.||.||.||.||.|
BL05160___rim    147 GCCTGTCCAGGTGACCGTCAGCGCCCACAGGCTTCACAAACAGTTCCACC    196

BSNT_02618___    197 TCCTGCAGTTTAAAGAAAGACAAAAC-CTAAATGAAGTAGAAGAGCTGAA    245
                     |..|||||||||||| |.|...|||| ||.|..||||..|||.|..|.||
BL05160___rim    197 TTTTGCAGTTTAAAG-AGGTTGAAACGCTCACCGAAGCCGAAAAATTAAA    245

BSNT_02618___    246 AAACGCAATCATTAAAGTTCCTGAAGAAGAATTAGGAGAGCTGAATGAGG    295
                     .||.||..|.|||||||||||.|||||..|||||.|..||.||...||.|
BL05160___rim    246 GAATGCCTTGATTAAAGTTCCCGAAGACCAATTAAGCCAGTTGGCGGAAG    295

BSNT_02618___    296 GTGAATTTTATTTCCACGAAATTATTGGGTGTGAAGTATTTACTGAAGAA    345
                     ..||||..||.||.||||||||.||.||.||.||.||.||..|.|||||.
BL05160___rim    296 ACGAATACTACTTTCACGAAATCATCGGCTGCGATGTTTTCTCGGAAGAC    345

BSNT_02618___    346 GGCGAACTCATCGGAAAGGTCAAAGAAATTTTGACGCCTGGAGCCAATGA    395
                     ||.||..|.|||||.|||||.|||||||||||.|||||.||.|||||.||
BL05160___rim    346 GGGGATTTAATCGGCAAGGTGAAAGAAATTTTAACGCCGGGCGCCAACGA    395

BSNT_02618___    396 CGTTTGGGTCATCGGAC-GAAAAGGAAAAAAAGACGCACTCATTCCTTAC    444
                     .||.||||||.| ||.| ||...|||||.||||||||.|||||.|||||.
BL05160___rim    396 TGTCTGGGTCGT-GGCCAGACCGGGAAAGAAAGACGCGCTCATCCCTTAT    444

BSNT_02618___    445 ATTGAATCAGTGGTCAAACATATCGATGTCAG-GGAAAAGAAAATTGAGA    493
                     |||||..|.||.||||||.|.||..|.|| || |||.||.|..||..|||
BL05160___rim    445 ATTGACGCCGTTGTCAAAGAGATTAACGT-AGCGGATAAAACGATCAAGA    493

BSNT_02618___    494 TTGAACTCATGGAAGGGTTAATAGACGAATGA    525
                     ||.|..||||||||||.|||.|.|||||||||
BL05160___rim    494 TTCATATCATGGAAGGATTACTTGACGAATGA    525


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