Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02502 and BL05158
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_02502___ylbQ.1.5803.seq
# -bsequence dna-align/BL05158___panE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02502___ylbQ-BL05158___panE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02502___ylbQ-BL05158___panE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02502___ylbQ
# 2: BL05158___panE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity: 577/1005 (57.4%)
# Similarity: 577/1005 (57.4%)
# Gaps: 231/1005 (23.0%)
# Score: 1525.5
#
#
#=======================================
BSNT_02502___ 1 ATGAAAATTGGAATTATCGGCGGAGGCTCCGTCGG--TCTTTTATGCGCC 48
.|||||||.|||.|.|||||.||||||||.||||| ||.|||.| ||.
BL05158___pan 1 GTGAAAATCGGAGTCATCGGAGGAGGCTCGGTCGGCCTCCTTTTT--GCA 48
BSNT_02502___ 49 TATTATTTGTCACTTTATCACGACGTGACTGTTGTGACGAGGCGGCAAGA 98
||.|||||.||..|....|||||.||||||||..|..||.||.|..|.||
BL05158___pan 49 TACTATTTTTCGTTCGGCCACGAAGTGACTGTGATTGCGCGGAGAAAGGA 98
BSNT_02502___ 99 ACAGGCTGCGGCCATTCGGTCTGAA------GGAATCCGGCTTTATAAAG 142
||||||.|..||.|| |||| ||||||||.|||..|.|||
BL05158___pan 99 ACAGGCGGAAGCGAT------TGAAGAAAAGGGAATCCGCCTTCTTGAAG 142
BSNT_02502___ 143 GCGGGGAGGAATT------------CAGGG------CTGA--TTGCAGTG 172
.||||.|.||..| ||||| |||| |||
BL05158___pan 143 ACGGGAAAGAGATGACCGTGAACGCCAGGGGCGTGACTGAACTTG----- 187
BSNT_02502___ 173 CGGACACGAGTATCAATTCGGACTTTGACCTGCTTGTCGTAACAGTGAAG 222
||.||||||..|||||.|||.|.||..|.||.|||
BL05158___pan 188 ---------------ATCCGGACTGCGACCTTCTTTTTGTTGCCGTAAAG 222
BSNT_02502___ 223 CAGCATCAGC---------TTCAGTCTGTTTTTTCGTCGCTTGAACGGAT 263
.||||||||| |||.||||| .|||.||
BL05158___pan 223 GAGCATCAGCTCGGAGCCGTTCTGTCTG---------AGCTGGA------ 257
BSNT_02502___ 264 CGGGAAGACGAAT-------ATATTATTTT--TGCAAAACGGCATGGGGC 304
|.||.||..| |.||.||.|| |||||||.||.||||.||
BL05158___pan 258 ---GCAGGCGGCTCCTCTTGACATCATGTTCCTGCAAAATGGAATGGCGC 304
BSNT_02502___ 305 ATATCCACGACCTAAAAGACTGGC--ACGTTGGCCATTCCATTTATGTTG 352
||||.|.||..||..||.|.|||| ||| |||||...|||.||| ..|
BL05158___pan 305 ATATTCCCGTGCTTGAAAAATGGCAGACG--GGCCACCGCATCTAT-ACG 351
BSNT_02502___ 353 GAATC-GTTGAGCACGGAGCTGTAAGAAAATCGGATACAGCTGTTGAT-- 399
|.||| ||.||.|||||||||||.|| .||.|||
BL05158___pan 352 GGATCTGTGGAACACGGAGCTGTCAG---------------GGTGGATGA 386
BSNT_02502___ 400 -------------CATACAGGCCTAGGTGCGATAAAATGGAGCGCATTCG 436
||.||.||...|||.||..|||||||||||||.|||
BL05158___pan 387 CCGCACATTCCGGCACACGGGAAAAGGGGCCGTAAAATGGAGCGCGTTC- 435
BSNT_02502___ 437 ACGATGCTGAAC--CAGACCGGCTGAACA------TCATGTTTC--AGCA 476
|||.||..|.| |.|.|||||||||.| || |.||| .|||
BL05158___pan 436 -CGAAGCCAATCCGCCGCCCGGCTGAAAAAAGAGCTC--GCTTCGGTGCA 482
BSNT_02502___ 477 T-AACCATTCGGATTT------TCCGATTTATTATGAGACGGATTGGTA- 518
| ||.|.|||...||| ||||| |||| |||||
BL05158___pan 483 TGAAGCGTTCCCTTTTATTTGGTCCGA---------AGAC----TGGTAT 519
BSNT_02502___ 519 ----CCGTCTGCTGACGGGCAAGCTGATTGTAAATGCGTGTATTAATCCT 564
||.|| ||.|| .||..|||||||.||||||||.||.|||||.
BL05158___pan 520 AAGCCCCTC-GCCGA----AAAATTGATTGTCAATGCGTGCATCAATCCG 564
BSNT_02502___ 565 TTAACTGCGTTATTGCAGGTGAAAAATGGAGAACTGC-TGACAACGCCAG 613
.|.||.||..|.||||.|||||||||.||.|..|||| |||..| ||| |
BL05158___pan 565 CTGACGGCTCTTTTGCGGGTGAAAAACGGCGCGCTGCTTGAGGA-GCC-G 612
BSNT_02502___ 614 CT-TATCTGGCTTTTATGAAGCTGGTATTTCAGGAGGCATGCAGCATTTT 662
.| |||..|||.|.|||||||.|.||.|||.|.||.||..||.|.|||||
BL05158___pan 613 ATGTATGGGGCCTATATGAAGTTCGTCTTTGAAGAAGCGAGCCGGATTTT 662
BSNT_02502___ 663 AAAACTTGAAAA---CGAAGAAAAGGCTTGGGAGCGGGTTCAGGCCGTTT 709
..||||||||.| |.|.|.| ||.|||||.|..||||...||||.|
BL05158___pan 663 GGAACTTGAAGATCGCCAGGCA---GCGTGGGACCATGTTCTTTCCGTCT 709
BSNT_02502___ 710 GTGGACAAACGAAAGAG--AATCGTTCATCAATGCTGGTTGACGTCATTG 757
|..|.|..|||||| || |..|| ||.||||||||.|..||.||
BL05158___pan 710 GCCGCCGGACGAAA-AGCAACACG-TCCTCAATGCTTGCCGATGT----- 752
BSNT_02502___ 758 GAGGCCGGCAG--------ACGGAAGCTGACGCCATTATCGGATACTTAT 799
||.||||| ||||||||.||.||.||.|||||.||..|..
BL05158___pan 753 ---GCTGGCAGAAAGAAAAACGGAAGCGGATGCGATCATCGGCTATCTGC 799
BSNT_02502___ 800 TGAAGGAAGCA----AGTCTTCAAGGTCTTGATGCCGTC---CACCTAGA 842
|||||...||| |||| ||| .||..|||.| |||||...
BL05158___pan 800 TGAAGCGGGCAAAAGAGTC----AGG---AGAGCCCGCCCCGCACCTTAC 842
BSNT_02502___ 843 GTTTTTATATGGCAGCATCAAAGCATTGGAGCGAAATACAAACAAAGTCT 892
.|||||||||.||||||||||.||..|.|| ||||.||
BL05158___pan 843 CTTTTTATATCGCAGCATCAAGGCGCTTGA---------AAACGAA---- 879
BSNT_02502___ 893 TTTGA 897
|||
BL05158___pan 880 --TGA 882
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