Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01820 and BL05100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:19
# Commandline: needle
# -asequence dna-align/BSNT_01820.1.5803.seq
# -bsequence dna-align/BL05100___gerPE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01820-BL05100___gerPE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01820-BL05100___gerPE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01820
# 2: BL05100___gerPE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 450
# Identity: 216/450 (48.0%)
# Similarity: 216/450 (48.0%)
# Gaps: 171/450 (38.0%)
# Score: 527.0
#
#
#=======================================
BSNT_01820 1 --------------------------GTGTTT-CAAGT------TGGCGA 17
||.||| .|||| ||.||.
BL05100___ger 1 ATGATTCTCAGAACGTCCAAAGTGAAGTTTTTAAAAGTACACTCTGTCGG 50
BSNT_01820 18 CACAA--------ATG-AAATCG----------ATATGAGTGT------- 41
.|.|| .|| |||||| |.|..|||.|
BL05100___ger 51 AATAAGCAGCACGCTGCAAATCGGAGACACGGAAGAGCAGTTTCTCAAGT 100
BSNT_01820 42 -AAAAGTATTTGCTGTTC------AGCGTTCTCTGTCCACGTTTTACAAT 84
||||||..|.||.|||| |.|.|||||| .||||||...
BL05100___ger 101 CAAAAGTTCTCGCCGTTCAAAGATACCTTTCTCT------TTTTTACGGA 144
BSNT_01820 85 AATGAAGGCTCATTTAACAAAAAGGAGTACCAGATCTTTCAGC--AGCAG 132
||||||||.|||||| |||.|||| .||| ||||||| ..|||
BL05100___ger 145 AATGAAGGGTCATTT---AAACAGGA-----TGAT-TTTCAGCTTTTCAG 185
BSNT_01820 133 GCAGTGAAGCCGAT-----------TCCC-GAAACAGGTGTACAAAGC-- 168
|| ||||||| |||| |||||.||.|| |.||
BL05100___ger 186 GC-----AGCCGATCCCGCAACTTCTCCCAGAAACCGGCGT---ATGCTC 227
BSNT_01820 169 -GCATTTTGCCACGAGGTGCC---------------GGCTATTTATGTTC 202
||.||||.|||.|||.|.|| |||.|||
BL05100___ger 228 GGCTTTTTTCCATGAGATCCCCTTCATCCGTGTAAGGGCGATT------- 270
BSNT_01820 203 GCAGCATCAAAATTCAA-GGGGTGTCCGCCTCTTCTGTTTTACATGCTGG 251
|||.|||| ||.||.||..|.||.||.|||...||.|..||
BL05100___ger 271 ---------AAAATCAACGGTGTATCATCATCCTCCGTTGCTCAGGTCGG 311
BSNT_01820 252 TTCA--GCTTCGCTTATCCGCGGTGATGCGAGAATCAAACATATCAGACA 299
.||| ||..||| |||...|..||..|||||.||||||||||||||.|
BL05100___ger 312 CTCAACGCGCCGC--ATCAATGCCGACTCGAGAGTCAAACATATCAGAAA 359
BSNT_01820 300 GATTCAGTCTCCGCG-------CTCACAATCGCCCGCCAAGAACATATAA 342
|.||| |||| || ||||||||.|
BL05100___ger 360 GCTTC---CTCC-CGCAAGGAACTCACAATAG------------------ 387
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